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Thread: Post your MDLP K16 results (r files)

  1. #11
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    Nice fst christmas tree


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    Thank you Shaz

    ----------------------------
    FINAL ADMIXTURE PROPORTIONS:
    ----------------------------

    0.00% Amerindian
    0.00% Ancestor
    15.21% Steppe
    0.01% Indian
    0.00% Arctic
    0.00% Australian
    35.87% Caucasian
    0.00% EastAfrican
    14.80% NorthEastEuropean
    3.24% NearEast
    29.84% Neolithic
    1.02% NorthAfrican
    0.01% Oceanic
    0.00% Siberian
    0.00% SouthEastAsian
    0.00% Subsaharian

    Least-squares method.

    Using 1 population approximation:
    1 Greek_Comas @ 3.600395
    2 Kosovar @ 3.828655
    3 Albanian @ 3.894237
    4 Greek @ 4.642247
    5 Italian_Tuscan @ 5.245303
    6 Tuscan @ 5.474375
    7 Greek-Peloponness @ 6.265101
    8 Italy_Abruzzo @ 7.238882
    9 Gagauz @ 7.38466
    10 Italy_North @ 7.754261
    11 Bulgarians @ 7.827416
    12 Macedonians @ 8.003154
    13 Greek-Macedonia @ 8.439462
    14 Bulgarian @ 8.529723
    15 Bulgaria @ 8.879535
    16 Italy_South @ 8.897771
    17 Greek_WGA @ 9.140538
    18 Sicilian @ 9.217096
    19 Italian_South @ 9.407759
    20 Romanians_Gorj @ 9.662311
    621 iterations.

    Using 2 populations approximation:
    1 Greek_Comas+Italian_Tuscan @ 3.061663
    2 Greek_Coriell+Italian_Bergamo @ 3.064865
    3 Greek_WGA+Italian_Bergamo @ 3.220882
    4 Albanian+Italian_Tuscan @ 3.234937
    5 Greek-Macedonia+Italian_Bergamo @ 3.247947
    6 Greek_Comas+Kosovar @ 3.252339
    7 Albanian+Kosovar @ 3.409026
    8 Greek_Comas+Tuscan @ 3.474813
    9 Greek+Italian_Tuscan @ 3.592625
    10 Greek_Comas+Greek_Comas @ 3.600395
    11 Albanian+Tuscan @ 3.611532
    12 Kosovar+Tuscan @ 3.72453
    13 Albanian+Greek_Comas @ 3.728741
    14 Italian_Tuscan+Kosovar @ 3.734918
    15 Greek+Kosovar @ 3.741281
    16 Kosovar+Kosovar @ 3.828655
    17 Albanian+Albanian @ 3.894237
    18 Greek-Macedonia+Italian_Tuscan @ 3.918961
    19 Greek+Greek_Comas @ 3.968438
    20 Greek-Peloponness+Italian_Tuscan @ 4.050498

  3. #13
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    very low genotype rate for me (63 percent). I wonder why

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    0.04% Amerindian
    0.00% Ancestor
    15.86% Steppe
    0.00% Indian
    0.00% Arctic
    0.66% Australian
    35.88% Caucasian
    0.00% EastAfrican
    12.67% NorthEastEuropean
    4.32% NearEast
    30.27% Neolithic
    0.07% NorthAfrican
    0.23% Oceanic
    0.00% Siberian
    0.00% SouthEastAsian
    0.00% Subsaharian

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    Using 1 population approximation:
    1 Irish_Connacht @ 3.812342
    2 Scottish_Dumfries_Galloway @ 3.958146
    3 English_Kent_GBR @ 4.015161
    4 Scottish_Highlands @ 4.060815
    5 English_Cornwall_GBR @ 4.309209
    6 French_West @ 4.517483
    7 Irish_Munster @ 4.553911
    8 Dutch @ 4.574033
    9 Irish_Ulster @ 4.587242
    10 Scottish_Fife @ 4.66287
    11 Scottish_Borders @ 4.720325
    12 Scottish_Grampian @ 4.753227
    13 Irish_Cork_Kerry @ 4.91847
    14 English @ 4.963954
    15 Orcadian @ 4.974254
    16 Irish_Leinster @ 5.076477
    17 Norwegian @ 5.136977
    18 Scottish_Argyll_Bute_GBR @ 5.28784
    19 Icelandic @ 5.968995
    20 German_Lipsian @ 6.22756

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    And the people with the most Steppe ancestry in Europe, according to this calculator, are... Basques? At 28.48%? I wonder how MDLP reached this number, as the owner doesn't explain what references he uses for each component. Seems a bit weird...

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    Quote Originally Posted by PunhetaDeBacalhau View Post
    And the people with the most Steppe ancestry in Europe, according to this calculator, are... Basques? At 28.48%? I wonder how MDLP reached this number, as the owner doesn't explain what references he uses for each component. Seems a bit weird...
    I think this is an effect of them scoring low NorthEast Europeans (which has ofc lots of steppe), so most of their WHG is hidden in the "neolithic", + steppe, whereas for other Euro it is more spread on all three HG rich components.

  8. #18
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    ...

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    0.01% Amerindian
    0.00% Ancestor
    23.94% Steppe
    0.01% Indian
    0.05% Arctic
    0.00% Australian
    19.99% Caucasian
    0.00% EastAfrican
    26.64% NorthEastEuropean
    0.90% NearEast
    28.33% Neolithic
    0.00% NorthAfrican
    0.00% Oceanic
    0.13% Siberian
    0.00% SouthEastAsian
    0.00% Subsaharian


    Least-squares method.

    Using 1 population approximation:
    1 Scottish_Dumfries_Galloway @ 3.403188
    2 Dutch @ 3.541767
    3 Irish_Connacht @ 3.927706
    4 Scottish_Fife @ 3.934394
    5 Scottish_Highlands @ 3.970993
    6 Irish_Munster @ 3.994963
    7 Scottish_Grampian @ 4.227325
    8 English @ 4.446215
    9 French_West @ 4.521875
    10 Irish_Cork_Kerry @ 4.715224
    11 Scottish_Borders @ 4.981055
    12 German_Lipsian @ 5.02237
    13 Hungarian_WestUkraine @ 5.024356
    14 Irish_Leinster @ 5.025566
    15 English_Cornwall_GBR @ 5.091611
    16 Irish_Ulster @ 5.194479
    17 English_Kent_GBR @ 5.281063
    18 German @ 6.033612
    19 Scottish_Argyll_Bute_GBR @ 6.035193
    20 Germans @ 6.102376

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    ----------------------------
    FINAL ADMIXTURE PROPORTIONS:
    ----------------------------

    12.82% Amerindian
    0.68% Ancestor
    12.19% Steppe
    0.37% Indian
    0.01% Arctic
    0.01% Australian
    19.16% Caucasian
    0.68% EastAfrican
    13.35% NorthEastEuropean
    3.68% NearEast
    25.32% Neolithic
    1.43% NorthAfrican
    0.71% Oceanic
    0.15% Siberian
    0.00% SouthEastAsian
    9.45% Subsaharian

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