Harappa Ancestry Project

**Transhumanist** · 07-19-2011, 02:41 PM

Not sure if anyone follows the project. It is very well run. And there are a few European individuals participating.

The site: Harappa Ancestry Project -Genetics and South Asia

I am HRP0010 (Assyrian Iranian_Nestorian A005), by the way.

I calculated the average values for groups with more than one participant, through HRP0150. Below, are the group average values, and all single participants not otherwise included among one of the listed groups:

Code:

AXXX	C1	C2	C3	C4	C5	C6	C7	C8	C9	C10	C11
A001	0.77%	0.02%	0.41%	0.65%	11.79%	0.00%	70.98%	0.00%	8.62%	5.93%	0.82%
A002	61.41%	31.62%	1.09%	4.04%	0.40%	0.97%	0.00%	0.14%	0.31%	0.02%	0.00%
A003	55.80%	24.54%	0.72%	7.60%	7.22%	1.39%	0.00%	1.47%	1.26%	0.00%	0.00%
A004	61.96%	29.84%	0.71%	5.96%	0.70%	0.45%	0.00%	0.29%	0.09%	0.00%	0.00%
A005	24.94%	0.00%	0.00%	59.20%	15.26%	0.00%	0.00%	0.00%	0.18%	0.42%	0.00%
A006	25.00%	0.00%	0.00%	58.12%	15.95%	0.34%	0.00%	0.00%	0.34%	0.24%	0.00%
A007	26.73%	0.00%	0.00%	57.48%	15.61%	0.00%	0.00%	0.18%	0.00%	0.00%	0.00%
A008	24.39%	0.69%	2.38%	44.17%	22.86%	4.00%	0.00%	0.00%	1.22%	0.30%	0.00%
A009	50.93%	28.34%	10.42%	3.08%	5.34%	0.84%	0.00%	0.67%	0.39%	0.00%	0.00%
A010	53.14%	23.14%	2.56%	4.46%	14.73%	1.13%	0.00%	0.30%	0.55%	0.00%	0.00%
A011	54.62%	26.71%	4.43%	1.35%	10.82%	0.00%	0.00%	1.51%	0.54%	0.00%	0.00%
A012	53.13%	28.76%	5.44%	4.47%	7.39%	0.52%	0.00%	0.00%	0.30%	0.00%	0.00%
A013	50.93%	22.98%	0.58%	9.94%	12.71%	2.40%	0.00%	0.45%	0.00%	0.00%	0.00%
A014	52.33%	18.29%	2.31%	7.02%	17.14%	0.00%	0.00%	1.32%	1.60%	0.00%	0.00%
A015	57.12%	29.68%	1.75%	1.80%	9.36%	0.00%	0.00%	0.00%	0.30%	0.00%	0.00%
A016	52.91%	21.58%	2.45%	8.14%	12.78%	0.97%	0.00%	0.00%	1.16%	0.00%	0.00%
A017	52.70%	24.41%	1.91%	5.91%	12.20%	0.99%	0.00%	1.66%	0.21%	0.00%	0.00%
A018	1.52%	1.73%	1.18%	17.98%	38.30%	0.00%	14.35%	0.00%	18.44%	1.13%	5.36%
A019	3.86%	0.00%	2.45%	16.01%	77.24%	0.00%	0.00%	0.06%	0.38%	0.00%	0.00%
A020	52.58%	29.59%	1.63%	5.00%	7.15%	0.08%	1.92%	0.92%	1.12%	0.00%	0.02%
A021	13.59%	0.62%	0.00%	56.04%	12.92%	0.80%	4.61%	0.89%	0.00%	0.00%	10.52%
A022	8.44%	1.12%	3.31%	17.11%	44.60%	0.41%	18.14%	0.80%	1.38%	2.54%	2.14%
A023	16.61%	0.00%	0.00%	28.25%	52.61%	1.91%	0.00%	0.61%	0.00%	0.00%	0.00%
A024	20.49%	0.00%	0.37%	44.64%	33.60%	0.79%	0.00%	0.00%	0.06%	0.04%	0.00%
A025	59.37%	23.72%	0.48%	7.04%	7.22%	0.45%	0.00%	1.06%	0.66%	0.00%	0.00%
A026	63.40%	26.22%	1.16%	3.37%	4.54%	0.12%	0.00%	0.66%	0.53%	0.00%	0.01%
A027	56.00%	15.88%	1.84%	8.13%	15.23%	0.72%	0.00%	1.48%	0.72%	0.00%	0.00%
A028	51.45%	12.67%	0.79%	15.02%	18.47%	0.78%	0.00%	0.00%	0.83%	0.00%	0.00%
A029	56.11%	31.01%	2.68%	3.31%	5.39%	1.49%	0.00%	0.00%	0.00%	0.00%	0.00%
A030	7.93%	0.76%	0.00%	30.99%	46.00%	0.91%	10.72%	0.69%	0.42%	1.14%	0.44%
A031	51.07%	10.14%	0.43%	19.98%	16.13%	1.18%	0.14%	0.33%	0.60%	0.00%	0.00%
A032	30.06%	11.70%	2.12%	13.03%	41.35%	0.71%	0.00%	1.02%	0.00%	0.00%	0.00%
A033	12.97%	3.85%	0.04%	19.04%	63.50%	0.00%	0.00%	0.23%	0.00%	0.36%	0.00%
A034	29.77%	0.54%	1.56%	44.84%	19.44%	2.17%	0.12%	0.09%	0.71%	0.28%	0.48%
A035	34.16%	2.92%	0.28%	40.19%	17.23%	4.08%	0.00%	0.00%	0.44%	0.00%	0.68%
A036	22.03%	0.99%	0.83%	57.65%	10.68%	0.30%	2.20%	0.94%	0.59%	0.74%	3.07%
A037	22.79%	0.52%	0.00%	57.89%	15.83%	0.00%	0.00%	0.45%	0.64%	0.00%	1.88%
A038	20.70%	0.00%	0.66%	61.40%	14.82%	0.00%	0.00%	0.78%	0.00%	0.00%	1.64%
A039	5.82%	0.21%	0.00%	19.07%	73.69%	0.00%	0.00%	0.00%	1.20%	0.00%	0.00%
A040	58.94%	29.33%	0.14%	6.92%	4.32%	0.00%	0.00%	0.34%	0.00%	0.00%	0.00%
A041	56.17%	23.20%	0.24%	6.14%	11.50%	1.07%	0.00%	0.40%	1.29%	0.00%	0.00%
A042	56.64%	25.73%	0.00%	7.84%	9.25%	0.26%	0.00%	0.00%	0.28%	0.00%	0.00%
A043	56.51%	25.23%	0.00%	5.77%	12.48%	0.00%	0.00%	0.00%	0.00%	0.00%	0.00%
A044	58.84%	25.92%	0.00%	4.58%	7.61%	2.88%	0.00%	0.00%	0.16%	0.00%	0.00%
A045	55.23%	24.79%	1.79%	7.46%	10.68%	0.05%	0.00%	0.00%	0.00%	0.00%	0.00%
A046	59.82%	27.21%	2.30%	5.37%	1.44%	0.00%	0.00%	2.41%	1.44%	0.00%	0.00%
A047	50.58%	15.81%	0.36%	12.81%	18.13%	0.84%	0.00%	0.43%	1.02%	0.00%	0.00%
A048	10.55%	0.00%	27.57%	10.08%	21.77%	28.79%	0.00%	0.00%	1.24%	0.00%	0.00%
A049	57.88%	22.51%	0.88%	8.90%	7.41%	1.31%	0.00%	0.00%	0.90%	0.00%	0.22%
A050	58.34%	26.90%	0.83%	9.76%	3.65%	0.00%	0.00%	0.48%	0.00%	0.00%	0.04%
A051	57.67%	28.82%	3.02%	5.90%	3.51%	0.00%	0.00%	1.08%	0.00%	0.00%	0.00%
A052	55.93%	24.47%	0.00%	9.15%	7.46%	1.82%	0.00%	0.85%	0.33%	0.00%	0.00%
A053	58.15%	24.97%	2.10%	9.38%	4.02%	0.12%	0.00%	0.46%	0.64%	0.14%	0.00%
A054	28.10%	0.17%	0.48%	46.05%	21.46%	1.85%	0.00%	0.00%	1.24%	0.00%	0.64%
A055	29.79%	0.82%	0.83%	47.33%	18.54%	1.57%	0.12%	0.07%	0.37%	0.20%	0.34%
A056	29.88%	0.00%	0.00%	44.80%	20.71%	2.19%	0.00%	0.00%	1.58%	0.35%	0.49%
A057	57.84%	26.16%	0.00%	4.07%	9.63%	1.03%	0.00%	0.78%	0.49%	0.00%	0.00%
A058	58.54%	23.19%	0.63%	8.15%	8.57%	0.00%	0.00%	0.00%	0.92%	0.00%	0.00%
A059	2.20%	0.00%	1.75%	14.48%	22.57%	2.83%	7.14%	0.75%	46.43%	1.57%	0.28%
A060	1.72%	0.32%	4.51%	18.18%	23.78%	0.35%	0.61%	0.31%	48.96%	1.26%	0.00%
A061	54.05%	25.46%	1.23%	3.28%	13.08%	1.58%	0.00%	0.00%	1.32%	0.00%	0.00%
A062	18.67%	0.10%	0.35%	58.48%	14.89%	0.83%	2.49%	0.00%	0.35%	0.00%	3.84%
A063	6.87%	0.61%	0.20%	18.05%	73.72%	0.00%	0.00%	0.52%	0.00%	0.03%	0.00%
A064	52.62%	17.65%	1.20%	10.55%	14.48%	1.63%	0.00%	0.33%	1.51%	0.02%	0.03%
A065	52.95%	14.02%	0.00%	15.18%	15.02%	1.57%	0.00%	0.00%	1.25%	0.00%	0.00%
A066	41.97%	12.12%	0.29%	24.10%	15.35%	0.62%	1.75%	0.28%	0.63%	0.59%	2.30%
A067	53.42%	17.39%	0.13%	9.95%	16.55%	1.13%	0.00%	0.00%	1.42%	0.00%	0.00%
A068	50.23%	14.24%	0.53%	12.93%	20.03%	0.30%	0.00%	0.28%	1.46%	0.00%	0.00%
A069	54.65%	16.95%	0.68%	12.82%	11.82%	2.23%	0.00%	0.00%	0.84%	0.00%	0.00%
A070	53.31%	17.63%	1.03%	8.10%	18.24%	1.44%	0.00%	0.00%	0.25%	0.00%	0.00%
A071	51.05%	15.00%	2.31%	8.98%	20.97%	0.03%	0.00%	0.00%	1.31%	0.34%	0.00%
A072	19.57%	6.36%	1.18%	30.74%	40.45%	0.19%	0.00%	0.55%	0.95%	0.00%	0.00%
A073	6.44%	0.00%	0.00%	20.64%	70.44%	0.00%	0.39%	0.00%	0.87%	0.00%	1.23%
A074	12.69%	2.66%	0.06%	20.45%	63.97%	0.00%	0.00%	0.00%	0.17%	0.00%	0.00%
A075	11.34%	0.00%	0.11%	28.17%	55.58%	3.87%	0.39%	0.00%	0.54%	0.00%	0.00%
A076	51.98%	11.24%	0.00%	14.96%	18.26%	1.90%	0.00%	0.48%	1.17%	0.00%	0.00%
A077	52.35%	12.10%	0.00%	18.20%	12.76%	0.63%	1.95%	0.00%	1.44%	0.10%	0.47%
A078	55.78%	28.21%	0.49%	4.74%	7.42%	2.56%	0.00%	0.44%	0.34%	0.00%	0.00%
A079	50.74%	25.50%	5.09%	8.39%	9.90%	0.23%	0.00%	0.00%	0.09%	0.00%	0.04%
A080	35.32%	18.40%	0.00%	10.21%	35.49%	0.24%	0.00%	0.13%	0.20%	0.00%	0.00%
A081	59.37%	35.29%	2.03%	1.69%	0.51%	0.00%	0.00%	1.11%	0.00%	0.00%	0.00%
A082	57.06%	24.82%	0.18%	7.42%	8.95%	0.14%	0.00%	0.37%	1.06%	0.00%	0.00%
A083	57.02%	25.57%	1.35%	8.54%	6.42%	0.06%	0.00%	0.37%	0.68%	0.00%	0.00%
A084	56.96%	24.78%	0.27%	6.56%	9.63%	0.21%	0.00%	0.91%	0.68%	0.00%	0.00%
A085	55.89%	30.30%	3.56%	5.14%	3.15%	1.02%	0.00%	0.32%	0.21%	0.00%	0.41%
A086	59.15%	32.61%	1.89%	4.27%	0.27%	0.21%	0.00%	1.53%	0.04%	0.00%	0.03%
A087	58.63%	36.44%	1.38%	1.19%	0.13%	0.48%	0.00%	1.64%	0.00%	0.00%	0.12%
A088	50.89%	9.33%	0.03%	15.34%	18.83%	1.87%	0.00%	0.54%	3.17%	0.00%	0.00%
A089	20.78%	0.00%	1.92%	50.05%	23.88%	3.04%	0.00%	0.33%	0.00%	0.00%	0.00%
A090	52.30%	20.94%	0.24%	6.47%	17.48%	1.27%	0.00%	0.50%	0.81%	0.00%	0.00%
A091	56.71%	24.69%	1.44%	7.40%	9.19%	0.25%	0.00%	0.00%	0.32%	0.00%	0.00%
A092	48.09%	20.90%	4.50%	13.15%	10.34%	2.40%	0.34%	0.00%	0.00%	0.00%	0.29%
A093	55.76%	24.89%	2.23%	7.21%	9.78%	0.00%	0.00%	0.12%	0.00%	0.00%	0.00%
A094	48.60%	18.71%	2.92%	12.64%	14.68%	0.00%	0.00%	0.46%	1.81%	0.00%	0.18%
A095	49.52%	13.16%	0.00%	7.68%	26.53%	1.32%	0.00%	0.38%	1.40%	0.00%	0.00%
A096	56.06%	19.05%	0.54%	7.52%	13.46%	1.66%	0.00%	0.18%	1.40%	0.00%	0.13%

Components are not identical to Dodecad components. In fact, they may be significantly distinct.

S Asian C1
Onge C2
E Asian C3
SW Asian C4
European C5
Siberian C6
W African C7
Papuan C8
American C9
San/Pygmy C10
E African C11

**Transhumanist** · 07-19-2011, 02:41 PM

Afro-Belizean A001
Andhra Pradesh A002
Andhra Pradesh (Hyderabadi) A003
Andhra Pradesh Reddy A004
Assyrian Iranian_Nestorian A005
Assyrian_AncientChurchofEast A006
Assyrian_ChaldeanCatholic A007
Azeri Turk A008
Bengali A009
Bengali Brahmin A010
Bengali/Marathi/Goan A011
Bengali/Oriya A012
Bihar/Jharkhand Muslim A013
Bihari Brahmin A014
Bihari Kayastha A015
Bihari Muslim A016
Bihari Syed A017
Brazilian A018
British (1/2), Danish (1/2) A019
Caribbean Indian A020
Egyptian A021
French/Martinique/Madagascar/Indian A022
Gagauz Turk (1/2), Ukrainian (1/4), South Ossetian (1/4) A023
Georgian A024
Goan Catholic Brahmin A025
Gujarati A026
Gujarati Ganchi A027
Halai Bhatia A028
HRP0045 A029
HRP0127 A030
HRP0132 A031
Indian (1/2), German (1/2) A032
Indian (1/5-1/4), rest English/Irish/French A033
Iranian A034
Iranian Khorasani A035
Iraqi Arab A036
Iraqi Mandaean A037
Iraqi/Egyptian Jewish A038
Irish A039
Karnataka A040
Karnataka Brahmin A041
Karnataka Iyengar A042
Karnataka Iyengar Brahmin A043
Karnataka Kannada Brahmin A044
Karnataka Konkani Brahmin A045
Karnataka Lingayat A046
Kashmiri A047
Kazakh A048
Kerala Brahmin A049
Kerala Christian A050
Kerala Muslim Rawther A051
Kerala Nair A052
Kerala Syrian Christian A053
Kurd (Iranian) A054
Kurd (Iraqi) A055
Kurd (Turkish) A056
Maharashtra/Madhya Pradesh Saraswat Brahmin A057
Mahrashtrian Desastha Brahmin A058
Mexican with possible Indian ancenstry A059
Mexican/Jewish A060
Oriya Brahmin A061
Palestinian A062
Prussian/Swiss/Scot/English/possible South Asian A063
Punjabi A064
Punjabi (1/2), Sindhi (1/2) A065
Punjabi (3/4), Egyptian (1/4) A066
Punjabi Brahmin A067
Punjabi Jatt A068
Punjabi Pahari Rajput A069
Punjabi Ramgarhia A070
Rajasthani Brahmin A071
Romani (1/2), Serb (1/2) A072
Romany (1/2), Libyan Jew, Gujarati,Greek, African American A073
Romany Gypsy A074
Russian (1/2), Ashkenazi (1/2) A075
Sindhi A076
Sindhi (1/2), Balochi (1/2) A077
Sourastrian A078
Sri Lankan A079
Sri Lankan (1/2), German/Polish (1/2) A080
Sri Lankan (1/2), Telegu (1/2) A081
Tamil Brahmin A082
Tamil Brahmin Iyengar A083
Tamil Brahmin Iyer A084
Tamil Muslim A085
Tamil Nadar A086
Tamil Vishwakarma A087
Thathai Bhatia A088
Turkish A089
UP Brahmin A090
UP Kayasth A091
UP Mixed Indian/Pakistani A092
UP Mughal/Pathan A093
UP Syed A094
UP/Haryana Jatt A095
UP/MP/Marathi A096

**Pallantides** · 07-19-2011, 02:43 PM

Do you have admixture scores for the Pathan, Burusho and Kalash?

**Transhumanist** · 07-19-2011, 02:58 PM

Most of the West Asian population averages (and samples where N=1):

Code:

POP	C1	C2	C3	C4	C5	C6	C7	C8	C9	C10	C11
ASY	26%	0%	0%	58%	16%	0%	0%	0%	0%	0%	0%
AZR	24%	1%	2%	44%	23%	4%	0%	0%	1%	0%	0%
IRN	30%	1%	2%	45%	19%	2%	0%	0%	1%	0%	0%
KHO	34%	3%	0%	40%	17%	4%	0%	0%	0%	0%	1%
KRD	29%	0%	0%	46%	20%	2%	0%	0%	1%	0%	0%
MAN	23%	1%	0%	58%	16%	0%	0%	0%	1%	0%	2%
TUR	21%	0%	2%	50%	24%	3%	0%	0%	0%	0%	0%

Assyrians and Kurds are no longer separated along denominational and geographical lines respectively.

ASY Assyrian N=4
AZR Azeri Turk N=1
IRN Iranian N=6
KHO Iranian Khorasani N=1
KRD Kurds N=6
MAN Iraqi Mandaean N=1
TUR Turk N=1

**Transhumanist** · 07-19-2011, 03:01 PM

Originally Posted by Pallantides

Do you have admixture scores for the Pathan, Burusho and Kalash?

Yes.

Code:

POP	C1	C2	C3	C4	C5	C6	C7	C8	C9	C10	C11
BUR	47%	10%	6%	12%	18%	5%	0%	1%	2%	0%	0%
KAL	60%	0%	3%	11%	22%	1%	0%	1%	2%	0%	0%
PAT	48%	11%	1%	17%	19%	2%	0%	0%	1%	0%	0%

**Pallantides** · 07-19-2011, 03:12 PM

Originally Posted by Transhumanist

Yes.

Code:

POP	C1	C2	C3	C4	C5	C6	C7	C8	C9	C10	C11
BUR	47%	10%	6%	12%	18%	5%	0%	1%	2%	0%	0%
KAL	60%	0%	3%	11%	22%	1%	0%	1%	2%	0%	0%
PAT	48%	11%	1%	17%	19%	2%	0%	0%	1%	0%	0%

Thanks, I wanted to see their East Asian, Siberian and American values

East Asian

Burusho:6%
Kalash: 3%
Pathan: 1%

Siberian

Burusho: 5%
Kalash: 1%
Pathan: 2%

American

Burusho: 2%
Kalash: 2%
Pathan: 1&

**Nurzat** · 07-19-2011, 03:12 PM

so the kalash are not that european after all

**Transhumanist** · 05-04-2012, 11:38 PM

HarappaWorld Admixture (Posted by Zack on May 4, 2012)

Here is a new admixture calculator. This uses populations all over the world and I got the best results (i.e., lowest crossvalidation error) at K=16.

Fst distances for the run.

I should have HarappaWorldOracle and DIYHarappaWorld calculators out in the next few days.

**Transhumanist** · 05-04-2012, 11:42 PM

My K=16 values, rounded to nearest whole percent:

0% S Indian
21% Baloch
50% Caucasian
1% NE Euro
0% SE Asian
0% Siberian
1% NE Asian
0% Papuan
0% American
0% Beringian
8% Mediterranean
19% SW Asian
0% San
0% E African
0% Pygmy
0% W African