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Thread: Dodecad Ancestry Project

  1. #481
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    40.26% Mediterranean
    0.00% Far_Asian
    0.06% Siberian
    47.10% North_European
    0.00% South_Asian
    0.00% West_African
    4.08% Caucasus
    7.94% Gedrosia
    0.08% East_African
    0.46% Southwest_Asian
    0.00% Southeast_Asian
    0.00% Northwest_African

  2. #482
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    K12a results:
    22.13% Mediterranean
    0.07% Far_Asian
    2.32% Siberian
    59.73% North_European
    2.04% South_Asian
    0.00% West_African
    10.33% Caucasus
    2.20% Gedrosia
    0.00% East_African
    1.04% Southwest_Asian
    0.12% Southeast_Asian
    0.01% Northwest_African

    Compared to genetic and a few geographical neighbours:


    Dodecad Oracle:
    [1,] "Polish_D" "3.7164"
    [2,] "Ukranians_Y" "5.332"
    [3,] "Russian_D" "7.0211"
    [4,] "Belorussian" "7.8957"
    [5,] "Russian_B" "8.1312"
    [6,] "Mordovians_Y" "9.9684"
    [7,] "Russian" "10.7038"
    [8,] "Hungarians" "15.0516"
    [9,] "Swedish_D" "15.5325"
    [10,] "Lithuanian_D" "15.6001"
    [11,] "FIN25" "15.6382"
    [12,] "Lithuanians" "15.8043"
    [13,] "German_D" "16.2597"
    [14,] "Finnish_D" "17.565"
    [15,] "Norwegian_D" "17.9142"
    [16,] "Chuvashs" "22.5191"
    [17,] "Mixed_Germanic_D" "23.6352"
    [18,] "Dutch_D" "23.9476"
    [19,] "CEU25" "24.0656"
    [20,] "British_Isles_D" "24.8209"


    Dodecad Oracle (mixed mode):
    [1,] "24.9% Dutch_D + 75.1% Russian_B" "1.83"
    [2,] "24.8% CEU25 + 75.2% Russian_B" "1.8826"
    [3,] "76.9% Russian_B + 23.1% Kent_1KG" "1.9489"
    [4,] "23.2% British_D + 76.8% Russian_B" "1.9527"
    [5,] "77.8% Russian_B + 22.2% Cornwall_1KG" "1.9584"
    [6,] "25.1% Mixed_Germanic_D + 74.9% Russian_B" "1.9695"
    [7,] "87.7% Polish_D + 12.3% Chuvashs" "2.0017"
    [8,] "24.2% British_Isles_D + 75.8% Russian_B" "2.0085"
    [9,] "76.3% Russian_B + 23.7% Argyll_1KG" "2.1201"
    [10,] "23.6% Irish_D + 76.4% Russian_B" "2.1223"
    Single Population Sharing (Eurogenes)
    1 Estonian_Polish 4.36
    2 Russian_Smolensk 4.88
    3 Southwest_Russian 5.32
    4 Belorussian 5.78
    5 Lithuanian 5.92

  3. #483
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    Quote Originally Posted by Pallantides View Post
    According to wikipedia 'Gedrosia' was the ancient Hellenized name for the area that is now Balochistan in Pakistan.
    http://en.wikipedia.org/wiki/Gedrosia
    Thanks for the link, but that's something I figured out before already, I was asking whether people have something in mind if talking about the origins of this component.

    On Dienekes blog, they speculate about a Central Asian component, which would make sense, as North European is this time so close to Caucasian and Gedrosian so widespread in Europe, that we might deal here with different interpretations in different admixture runs of a similar component which being now largely diluted and admixed, being categorised differently in different runs.

  4. #484
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    Now that I'm on the holiday break I got some time to run my raw data through DIYDodecad v3 2.1 and the K12a and Oracle:

    Dodecad ORACLE V1:
    DodecadOracle(c(10.27,51.84,26.91,0.00,8.75,0.61,0 .01,0.23,0.00,0.95,0.36,0.07))
    [,1] [,2]
    [1,] "CEU" "2.9717"
    [2,] "N._European" "5.0694"
    [3,] "Orcadian" "5.2101"
    [4,] "Argyll_1KG" "5.391"
    [5,] "Orkney_1KG" "5.6548"
    [6,] "German_D" "8.5726"
    [7,] "French" "9.6303"
    [8,] "French_D" "10.0577"
    [9,] "Mixed_Germanic_D" "10.6703"
    [10,] "Dutch_D" "11.7807"

    Two way mix mode -
    DodecadOracle(c(10.27,51.84,26.91,0.00,8.75,0.61,0 .01,0.23,0.00,0.95,0.36,0.07),mixedmode=T)
    [,1] [,2]
    [1,] "90.4% Orcadian + 9.6% S_Italian_D" "0.4005"
    [2,] "89.7% Orkney_1KG + 10.3% S_Italian_D" "0.4049"
    [3,] "12.5% C_Italian_D + 87.5% Orkney_1KG" "0.4141"
    [4,] "90.1% Orcadian + 9.9% Sicilian_D" "0.4439"
    [5,] "89.7% Orcadian + 10.3% S_Italian_Sicilian_D" "0.4723"
    [6,] "89.3% Orkney_1KG + 10.7% Sicilian_D" "0.4816"
    [7,] "11.7% C_Italian_D + 88.3% Orcadian" "0.4921"
    [8,] "14.5% O_Italian_D + 85.5% Orkney_1KG" "0.5639"
    [9,] "13.5% O_Italian_D + 86.5% Orcadian" "0.5794"
    [10,] "84.2% Orcadian + 15.8% Tuscan_X" "0.5924"


    Dodecad ORACLE K12a:

    DodecadOracle(c(38.56,0.11,0.02,43.44,0.25,0.00,10 .03,5.75,0.00,1.35,0.35,0.15))
    [,1] [,2]
    [1,] "Mixed_Germanic_D" "4.4115"
    [2,] "Dutch_D" "6.103"
    [3,] "CEU25" "6.6756"
    [4,] "German_D" "8.5308"
    [5,] "Kent_1KG" "8.5788"
    [6,] "British_D" "8.6306"
    [7,] "British_Isles_D" "8.7857"
    [8,] "French" "9.1252"
    [9,] "Cornwall_1KG" "9.5826"
    [10,] "French_D" "9.8159"

    Two way mix mode –


    [,1] [,2]
    [1,] "74.1% British_D + 25.9% Bulgarians_Y" "1.0815"
    [2,] "74.2% Kent_1KG + 25.8% Bulgarians_Y" "1.1205"
    [3,] "85.2% Mixed_Germanic_D + 14.8% Bulgarians_Y" "1.1247"
    [4,] "73.8% British_Isles_D + 26.2% Bulgarians_Y" "1.1584"
    [5,] "85.2% Mixed_Germanic_D + 14.8% Bulgarian_D" "1.2996"
    [6,] "74.1% British_D + 25.9% Bulgarian_D" "1.36"
    [7,] "25.8% Bulgarian_D + 74.2% Kent_1KG" "1.3872"
    [8,] "79% CEU25 + 21% Bulgarians_Y" "1.4182"
    [9,] "73.7% British_Isles_D + 26.3% Bulgarian_D" "1.4201"
    [10,] "77.6% French + 22.4% Russian_B" "1.4797"









    Last edited by Barreldriver; 12-13-2011 at 11:34 PM.

  5. #485
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    Ran it through Oracle. To be honest I think ORACLE V1 looked better for mixed mode. BUt then again I'm not sure how this compares with others.

    [1,] "CEU25" "1.404"
    [2,] "British_Isles_D" "1.5554"
    [3,] "Dutch_D" "1.8103"
    [4,] "British_D" "2.4177"
    [5,] "Kent_1KG" "2.5568"
    [6,] "Irish_D" "3.193"
    [7,] "Mixed_Germanic_D" "3.2501"
    [8,] "Argyll_1KG" "3.9107"
    [9,] "Cornwall_1KG" "4.0116"
    [10,] "Orcadian" "4.3632"


    [1,] "91.6% Kent_1KG + 8.4% Ukranians_Y" "0.4076"
    [2,] "92.1% British_D + 7.9% Ukranians_Y" "0.4363"
    [3,] "7.4% Russian_B + 92.6% Kent_1KG" "0.4411"
    [4,] "9.6% Polish_D + 90.4% Kent_1KG" "0.4539"
    [5,] "87.4% Cornwall_1KG + 12.6% Ukranians_Y" "0.4564"
    [6,] "97.9% British_Isles_D + 2.1% Chechens_Y" "0.4973"
    [7,] "91% British_D + 9% Polish_D" "0.509"
    [8,] "7.6% Belorussian + 92.4% Kent_1KG" "0.5312"
    [9,] "97.8% British_Isles_D + 2.2% Lezgins" "0.5497"
    [10,] "98% British_Isles_D + 2% Adygei" "0.5508"

  6. #486
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    My K12a values:

    Caucasus 51.7
    Southwest_Asian 18.6
    Gedrosia 16.9
    Mediterranean 10.7

    North_European 1.5
    Far_Asian 0.6
    Siberian 0.0
    South_Asian 0.0
    West_African 0.0
    East_African 0.0
    Southeast_Asian 0.0
    Northwest_African 0.0


    Assyrian_D Mix Mode top 10 matches (after excluding Azeri Jews):

    1 "53% Iraq_Jews + 47% Armenians_Y" "1.4147"
    2 "47.6% Armenian_D + 52.4% Iraq_Jews" "1.4364"
    3 "39.2% Armenian_D + 60.8% Iranian_Jews" "2.001"
    4 "61.8% Iranian_Jews + 38.2% Armenians_Y" "2.3646"
    5 "25% Armenians + 75% Iranian_Jews" "2.582"
    6 "32.1% Armenians + 67.9% Iraq_Jews" "2.9297"
    7 "16.3% Georgians + 83.7% Iraq_Jews" "3.3553"
    8 "84.6% Iraq_Jews + 15.4% Abhkasians_Y" "3.4881"
    9 "19.3% Cypriots + 80.7% Iranian_Jews" "3.6663"
    10 "31% Syrians + 69% Armenians_Y" "3.6901"

  7. #487
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    I followed the instructions, but the Oracle seem not to work for me correctly(getting weird indvidual results but populations seem to work fine though)




    So could someone be so nice to run my numbers through the oracle, I'm DOD197?

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    Quote Originally Posted by Pallantides View Post

    So could someone be so nice to run my numbers through the oracle, I'm DOD197?
    I'll do it for some money...

    Ok then. You are now Swedish. Good?

    [1,] "Swedish_D" "2.8054"
    [2,] "Norwegian_D" "5.872"
    [3,] "German_D" "11.1973"
    [4,] "Polish_D" "13.5447"
    [5,] "Orkney_1KG" "14.408"
    [6,] "Argyll_1KG" "15.2"
    [7,] "Orcadian" "15.2506"
    [8,] "Irish_D" "15.3196"
    [9,] "British_Isles_D" "15.4295"
    [10,] "CEU25" "15.8123"

    [1,] "89.2% Swedish_D + 10.8% Lithuanians" "0.9057"
    [2,] "89.2% Swedish_D + 10.8% Lithuanian_D" "0.9102"
    [3,] "79.2% Norwegian_D + 20.8% Lithuanian_D" "1.2567"
    [4,] "79.3% Norwegian_D + 20.7% Lithuanians" "1.2632"
    [5,] "9.7% Finnish_D + 90.3% Swedish_D" "1.3968"
    [6,] "88.2% Swedish_D + 11.8% Belorussian" "1.4191"
    [7,] "89.7% Swedish_D + 10.3% FIN25" "1.4956"
    [8,] "89.5% Swedish_D + 10.5% Russian_B" "1.5273"
    [9,] "11.5% Russian_D + 88.5% Swedish_D" "1.5319"
    [10,] "90.1% Swedish_D + 9.9% Russian" "1.6241"

  9. #489
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    Quote Originally Posted by Pallantides View Post
    I followed the instructions, but the Oracle seem not to work for me correctly(getting weird indvidual results but populations seem to work fine though)




    So could someone be so nice to run my numbers through the oracle, I'm DOD197?
    I had trouble at first as well as I'm clumsy at the keyboard, all I did was in R type DodecadOracle (c(insert various admixture percentiles without the % sign)) hit enter, then for the two way mix DodecadOracle (c(insert various admixture percentiles without the %sign),mixedmode=T) or something like that.

  10. #490
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    Would someone be able to run my results through Oracle also? Thanks a lot
    I am DOD804:

    38.40% Caucasus
    30.09% Mediterranean
    12.5% Southwest_Asian
    9.00% North_European
    5.8% Northwest_African
    1.4% Gedrosia
    1.20% South_Asian
    0.80% East_African
    0.00% West_African
    0.00% Far_Asian
    0.00% Southeast_Asian
    0.00% Siberian

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