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Thread: Gedmatch calculators on Vahaduo

  1. #1861
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    Quote Originally Posted by vbnetkhio View Post
    Lucas, could you add all these to k13 ancient?

    Code:
    scy192_Moldova_Scythian.SG_1650_ybp,19.33,15.87,24.64,13.25,21.59,2.68,0.53,0,0.91,0.42,0.76,0,0.01
    scy197_Moldova_Scythian.SG_1650_ybp,21.77,15.56,27.21,8.22,20.8,4.53,0,0,1.91,0,0,0,0
    scy305_Moldova_Scythian.SG_2254_ybp,27.8,11.06,20.79,10.94,21.92,0,3.07,0,1.66,1.84,0.29,0.65,0
    scy300_Moldova_Scythian.SG_2253_ybp,26.39,9.87,23.35,10.37,23.25,3.55,0,1.09,0,2.13,0,0,0
    scy311_Moldova_Scythian.SG_2247_ybp,29.28,14.3,13.36,17.27,14.15,1.64,3.11,3.04,1.27,2.34,0.24,0,0
    scy301_Moldova_Scythian.SG_2248_ybp,22.72,23.94,11.96,18.97,11.8,0,1.4,1.01,4.38,3.04,0,0,0.77
    scy303_Moldova_Scythian_o2.SG_2242_ybp,45.53,29.8,10.39,4.74,4.1,0,3.03,0,0,1.01,1.31,0.09,0
    
    ScythianMoldova_SCY311_Moldova_389-204_BC,38.58,18.93,18.02,11.92,11.13,0,0,0,0,0,0,0,1.43
    ScythianMoldova_SCY300_Moldova_397-209_BC,34.52,9.33,30.97,6.42,18.53,0.22,0,0,0,0,0,0,0
    ScythianMoldova_SCY197_Moldova_288502632_BC,33.89,13.8,29,2.16,20.45,0.7,0,0,0,0,0,0,0
    scy192_scythian_2863_2503bce_,28,13.64,31.82,6.93,19.38,0.22,0,0,0,0,0,0,0
    scy301_scythian_Moldova_390_205bce_,34.99,26.02,14.27,15.53,8.64,0,0,0,0,0.55,0,0,0
    scy303_scythian_Moldova_380_203bce_,55.23,31.22,11.90,1.65,0.00,0.00,0.00,0.00,0.00,0.00,0.00,0.00,0.00
    the SG version is very different from the normal one. i think people shuld be able to compare to both.
    Added

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    Quote Originally Posted by Lucas View Post
    Better?
    Worse and I don't think that there should be duplicate samples.

    Distance to: scy192_Moldova_Scythian.SG_1650_ybp
    3.88591045 Albanian_central_Albania
    3.90220451 Greek_Eastern-Macedonia
    3.92116054 Torbeshi_North-Macedonia-East
    4.96767551 Albanian_Albania
    4.97490703 Vlach_Central-Macedonia
    5.12555363 Albanian
    5.26485517 Albanian_Kosovo
    5.44478650 Albanian_north_Albania
    5.51688206 Kosovo_Albanian
    5.74342232 Greek_Peloponnese
    5.96184535 Greek_Thessaly
    6.19620852 Albanian_Montenegro
    6.32176399 Greek_Western-Thrace
    6.83904233 Albanian_south_Albania
    7.13965685 Torbeshi_North-Macedonia-Central
    7.35713939 Vlach_North-Macedonia
    7.42800108 Greek_Central-Macedonia
    7.46892228 Greek_Thessaloniki
    7.49430450 Albanian_Macedonia
    7.66047431 GR_Macedonia
    7.76470379 GR_Peloponese
    7.82357801 Bulgarian_Thrace
    7.98338274 Greek_Western-Macedonia
    8.26897817 Greek_Eastern-Thrace
    8.27527643 Turk_Kazanlik
    8.58604100 Macedonian_Southwest
    8.71784951 Turk_Alexandroupoli
    8.74038901 Macedonian_Central
    8.83487974 Macedonian_Southeast
    8.93161240 Bulgarian_Plovdiv
    8.95010614 Vlach_North-Macedonia-Highlander
    9.32471447 Turk_Kavala
    9.47877102 Greek_Northern-Thrace
    9.48419738 Turk_Thessaloniki
    9.49726178 North_Macedonian
    9.56588208 Macedonian_North
    9.61689659 Romagna
    9.75526012 Bulgarian_North-Rhodope
    9.80200490 Lazio
    9.88575743 Gagauz
    10.09244767 Marche
    10.15612623 Greek_Macedonia_Thrace
    10.29642171 Umbria
    10.44858842 Macedonian_East
    10.53628967 Pomak_Nevrokopi
    10.56091379 Macedonian_Greece
    10.67556088 Turk_Crete
    10.68061328 Bulgarian_Central
    10.77039461 Tuscany
    10.78253681 Central_Greek

    Distance to: scy192_scythian_2863_2503bce_
    7.61036793 Lombardy
    8.21921529 FrenchCorsica
    8.51479301 Liguria
    8.54334244 Emilia
    8.61624048 Tuscany
    9.29774704 Piedmont
    9.51386882 Veneto
    11.22844602 Tuscan
    11.44571972 Trentino
    11.50222152 Romagna
    11.89408677 Swiss-Italian2
    12.29107400 Lazio
    12.29144825 Umbria
    12.49542716 FRA_Provence
    12.78197559 Friuli-VG
    13.06155044 Marche
    13.11122039 Swiss_Italian
    13.40427171 Albanian_north_Albania
    13.68164829 Albanian_Kosovo
    14.02238567 Greek_Western-Thrace
    14.25308388 Spanish_Andalucia
    14.44901727 Vlach_Central-Macedonia
    14.49124908 Albanian
    14.53129726 Spanish_Extremadura
    14.61428753 Albanian_Albania
    14.77329381 Kosovo_Albanian
    14.90267761 Greek_Eastern-Macedonia
    14.99093059 Portuguese
    15.20281882 Torbeshi_North-Macedonia-East
    15.23987533 Spanish_Valencia
    15.26687918 Albanian_Macedonia
    15.45210342 Albanian_south_Albania
    15.46444632 Torbeshi_North-Macedonia-Central
    15.49442803 Albanian_central_Albania
    15.74940316 Spanish_Galicia
    15.79520497 Vlach_North-Macedonia
    15.81090763 Greek_Central-Macedonia
    15.99107876 Spanish_Murcia
    15.99292344 Albanian_Montenegro
    16.09229629 Macedonian_East
    16.15249613 North_Macedonian
    16.48804112 Bulgarian_Plovdiv
    16.54279602 Bulgarian_Central
    16.55313565 AostaValley
    16.58655178 Spanish_Cataluna
    16.62012936 Spanish_Castilla_La_Mancha
    16.92351914 Spanish_Castilla_Y_Leon
    16.95316490 Greek_Thessaly
    17.16584399 Bulgarian_Serres
    17.17128417 West_Sicilian

    Run with Global 25 coordinates for comparison
    Distance to: Scythian_MDA:scy192
    0.03169278 Greek_Thessaly
    0.03236811 Italian_Umbria
    0.03310296 Albanian
    0.03330800 Greek_Peloponnese
    0.03331785 Greek_Central_Macedonia
    0.03365049 Italian_Tuscany
    0.03527896 Italian_Marche
    0.03528722 Italian_Piedmont
    0.03541678 Italian_Molise
    0.03715650 Swiss_Italian
    0.03732629 Greek_Izmir
    0.03799659 Italian_Abruzzo
    0.03809924 Italian_Lazio
    0.04098982 French_Corsica
    0.04279906 Italian_Apulia
    0.04342582 Italian_Basilicata
    0.04428340 Italian_Veneto
    0.04431050 Italian_Lombardy
    0.04501619 Gagauz
    0.04506564 Italian_Bergamo
    0.04658284 Italian_Liguria
    0.04727562 Italian_Campania
    0.04752906 Sicilian_West
    0.04785316 Bulgarian
    0.04823806 Italian_Trentino-Alto-Adige


    Also, whoever is responsible for the Bulgarian samples should make regional averages. 17 references is too much, especially if some are based on 1-5 samples. That Dupnitsa sticks like a sore thumb.

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    Quote Originally Posted by Ion Basescul View Post
    Worse and I don't think that there should be duplicate samples.
    how do these distance tables prove that one of these versions is better or worse?
    one is obviously wrong, but until we figure out which one, they are both equally valid.
    Until then, people should be able to compare to both versions and decide which one makes more sense to them.

    Quote Originally Posted by Ion Basescul View Post
    Also, whoever is responsible for the Bulgarian samples should make regional averages. 17 references is too much, especially if some are based on 1-5 samples. That Dupnitsa sticks like a sore thumb.
    it's user Kaspias.

    i also made these simplified averages:
    https://www.theapricity.com/forum/sh...55#post6875455

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    Yeah, do we really need 5-6 Pomak and Torbeshi references?

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    Quote Originally Posted by Ion Basescul View Post
    Dupnitsa sticks like a sore thumb.
    Like a sore dupa.
    My DNA Origin analysis for 16 EUR (you get 2 reports examining ancestry from 2114 regions, 190 countries): https://www.exploreyourdna.com/DNAOrigin.aspx

    This analysis is not based on G25 but on ADMIXTURE. And it has more regions than any other DNA test!

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    Quote Originally Posted by Peterski View Post
    But they were not outliers, they were about 50% of entire sample?

    In that thread I posted K15 results of all individual Provence samples.

    About half were northern-shifted and the other half southern-shifted.

    If "Southerners" were just a small minority I would ignore them.
    There was a similar case here with the South Croat samples. There was a group that clustered with Slovenes and another group that clustered with Serbs. Since they were so different, I proposed having separate averages for them and it was done for a while before they were combined again.

    So even though the two groups are genetically different, it seems best to combine them as that's what the average person from there should score. Huge outliers (like if one clusters with Normans) could be excluded. Are you able to distinguish between the northern and southern shifted samples with full accuracy? Wouldn't there be some samples transitional between the two that make it hard to decide which one belongs in which group?

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    Quote Originally Posted by vbnetkhio View Post
    how do these distance tables prove that one of these versions is better or worse?
    one is obviously wrong, but until we figure out which one, they are both equally valid.
    By showing that the SG one is closer to how it works on Global 25, which is the benchmark against which we should compare.

    This one is especially ridiculous.

    Davidski's Global 25 (mix of Italian and Balkan pops in distances)

    Distance to: Scythian_MDA:scy197
    0.03508725 Italian_Piedmont
    0.03581732 Italian_Lombardy
    0.03589029 Albanian
    0.03589938 Greek_Thessaly
    0.03630896 Italian_Liguria
    0.03750360 Italian_Tuscany
    0.03832999 Italian_Bergamo
    0.03878050 Italian_Marche
    0.03915087 French_Corsica
    0.03992959 Swiss_Italian
    0.04056906 Italian_Umbria
    0.04087320 Italian_Veneto
    0.04097068 Italian_Trentino-Alto-Adige
    0.04164617 Greek_Central_Macedonia
    0.04370796 Italian_Lazio
    0.04478593 Italian_Molise
    0.04484785 Greek_Peloponnese
    0.04653811 Italian_Abruzzo
    0.04747566 Italian_Northeast
    0.04955077 Greek_Izmir
    0.04982110 Gagauz
    0.04994709 Spanish_Menorca
    0.05021826 Italian_Apulia
    0.05125463 Bulgarian
    0.05155938 Spanish_Baleares

    SG one from K13 (mix of Italian and Balkan pops in distances)

    Distance to: scy197_Moldova_Scythian.SG_1650_ybp
    6.87866266 Albanian_north_Albania
    7.29365478 Vlach_Central-Macedonia
    7.64342855 Torbeshi_North-Macedonia-East
    7.69003251 Albanian_Kosovo
    7.71172484 Albanian_Albania
    7.80235862 Albanian
    7.81294439 Greek_Eastern-Macedonia
    8.14415128 Albanian_central_Albania
    8.32019831 Tuscany
    8.68545336 Albanian_Macedonia
    8.75502142 Romagna
    8.80964490 Kosovo_Albanian
    9.07295983 Albanian_south_Albania
    9.07667340 Greek_Western-Thrace
    9.21926244 Vlach_North-Macedonia
    9.23403487 FrenchCorsica
    9.39195933 Albanian_Montenegro
    9.45345440 Emilia
    9.46202410 Tuscan
    9.54204381 Torbeshi_North-Macedonia-Central
    9.55164384 Greek_Thessaly
    9.60281729 Greek_Central-Macedonia
    9.68273722 Lazio
    9.99962999 Umbria
    10.20947599 Marche

    Your suggestion (Italians and Southwest Europeans)
    Distance to: ScythianMoldova_SCY197_Moldova_288502632_BC
    5.05924896 Lombardy
    6.82756179 Piedmont
    6.97853853 Swiss-Italian2
    7.12679451 Swiss_Italian
    8.17178071 Veneto
    8.26632929 Liguria
    8.45540064 Trentino
    8.92888571 FRA_Provence
    9.26836555 Emilia
    9.47829626 Spanish_Valencia
    9.84430292 Portuguese
    10.19473884 Spanish_Extremadura
    10.28693832 Spanish_Andalucia
    10.45607479 Tuscany
    10.54939335 Spanish_Murcia
    10.83650313 Friuli-VG
    10.85466720 FrenchCorsica
    11.15533953 Spanish_Galicia
    11.24464317 Spanish_Cataluna
    11.57187971 Spanish_Castilla_Y_Leon
    11.98993745 Spanish_Castilla_La_Mancha
    12.70738762 Tuscan
    12.82517446 FRA_Septimania
    13.13780042 AostaValley
    13.33125275 Spanish_Cantabria

    Bonus, which is self-explanatory really:

    Target: vbn(serb)
    Distance: 9.5890% / 9.58895517
    64.4 AV1_Hungary_Avar_1361_ybp
    35.6 ScythianMoldova_SCY197_Moldova_288502632_BC


    Target: vbn(serb)
    Distance: 5.4774% / 5.47740755
    55.6 AV1_Hungary_Avar_1361_ybp
    44.4 scy197_Moldova_Scythian.SG_1650_ybp

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    Quote Originally Posted by Ion Basescul View Post
    By showing that the SG one is closer to how it works on Global 25, which is the benchmark against which we should compare.

    This one is especially ridiculous.

    Davidski's Global 25 (mix of Italian and Balkan pops in distances)

    Distance to: Scythian_MDA:scy197
    0.03508725 Italian_Piedmont
    0.03581732 Italian_Lombardy
    0.03589029 Albanian
    0.03589938 Greek_Thessaly
    0.03630896 Italian_Liguria
    0.03750360 Italian_Tuscany
    0.03832999 Italian_Bergamo
    0.03878050 Italian_Marche
    0.03915087 French_Corsica
    0.03992959 Swiss_Italian
    0.04056906 Italian_Umbria
    0.04087320 Italian_Veneto
    0.04097068 Italian_Trentino-Alto-Adige
    0.04164617 Greek_Central_Macedonia
    0.04370796 Italian_Lazio
    0.04478593 Italian_Molise
    0.04484785 Greek_Peloponnese
    0.04653811 Italian_Abruzzo
    0.04747566 Italian_Northeast
    0.04955077 Greek_Izmir
    0.04982110 Gagauz
    0.04994709 Spanish_Menorca
    0.05021826 Italian_Apulia
    0.05125463 Bulgarian
    0.05155938 Spanish_Baleares

    SG one from K13 (mix of Italian and Balkan pops in distances)

    Distance to: scy197_Moldova_Scythian.SG_1650_ybp
    6.87866266 Albanian_north_Albania
    7.29365478 Vlach_Central-Macedonia
    7.64342855 Torbeshi_North-Macedonia-East
    7.69003251 Albanian_Kosovo
    7.71172484 Albanian_Albania
    7.80235862 Albanian
    7.81294439 Greek_Eastern-Macedonia
    8.14415128 Albanian_central_Albania
    8.32019831 Tuscany
    8.68545336 Albanian_Macedonia
    8.75502142 Romagna
    8.80964490 Kosovo_Albanian
    9.07295983 Albanian_south_Albania
    9.07667340 Greek_Western-Thrace
    9.21926244 Vlach_North-Macedonia
    9.23403487 FrenchCorsica
    9.39195933 Albanian_Montenegro
    9.45345440 Emilia
    9.46202410 Tuscan
    9.54204381 Torbeshi_North-Macedonia-Central
    9.55164384 Greek_Thessaly
    9.60281729 Greek_Central-Macedonia
    9.68273722 Lazio
    9.99962999 Umbria
    10.20947599 Marche

    Your suggestion (Italians and Southwest Europeans)
    Distance to: ScythianMoldova_SCY197_Moldova_288502632_BC
    5.05924896 Lombardy
    6.82756179 Piedmont
    6.97853853 Swiss-Italian2
    7.12679451 Swiss_Italian
    8.17178071 Veneto
    8.26632929 Liguria
    8.45540064 Trentino
    8.92888571 FRA_Provence
    9.26836555 Emilia
    9.47829626 Spanish_Valencia
    9.84430292 Portuguese
    10.19473884 Spanish_Extremadura
    10.28693832 Spanish_Andalucia
    10.45607479 Tuscany
    10.54939335 Spanish_Murcia
    10.83650313 Friuli-VG
    10.85466720 FrenchCorsica
    11.15533953 Spanish_Galicia
    11.24464317 Spanish_Cataluna
    11.57187971 Spanish_Castilla_Y_Leon
    11.98993745 Spanish_Castilla_La_Mancha
    12.70738762 Tuscan
    12.82517446 FRA_Septimania
    13.13780042 AostaValley
    13.33125275 Spanish_Cantabria

    Bonus, which is self-explanatory really:

    Target: vbn(serb)
    Distance: 9.5890% / 9.58895517
    64.4 AV1_Hungary_Avar_1361_ybp
    35.6 ScythianMoldova_SCY197_Moldova_288502632_BC


    Target: vbn(serb)
    Distance: 5.4774% / 5.47740755
    55.6 AV1_Hungary_Avar_1361_ybp
    44.4 scy197_Moldova_Scythian.SG_1650_ybp
    ^^^ And what is the source of the Non-SG sample?

    I remember that I processed and added the SG one.
    My DNA Origin analysis for 16 EUR (you get 2 reports examining ancestry from 2114 regions, 190 countries): https://www.exploreyourdna.com/DNAOrigin.aspx

    This analysis is not based on G25 but on ADMIXTURE. And it has more regions than any other DNA test!

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    MDLP K16 Ancient
    Target: ME
    Distance: 3.7974% / 3.79744022
    44.0 Armenia_EBA
    23.0 Anatolia_ChL
    15.8 Kotias
    5.4 Russia_LBA
    3.6 Levant_BA
    3.2 MiddleDorset
    2.2 Vestonice14
    1.6 Paglicci108
    1.2 Continenza

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    Quote Originally Posted by Ion Basescul View Post
    By showing that the SG one is closer to how it works on Global 25, which is the benchmark against which we should compare.
    why? Davidski obviously just used the reich lab/SG version of the sample.
    how does that make this version the better one? maybe Davidski doesn't know about, or doesn't have access to the other version.

    Quote Originally Posted by Ion Basescul View Post
    This one is especially ridiculous.

    Davidski's Global 25 (mix of Italian and Balkan pops in distances)
    SG one from K13 (mix of Italian and Balkan pops in distances)

    Your suggestion (Italians and Southwest Europeans)
    today's Balkanians are a specific mix of paleo-balkanians, different ethnicities from the Roman empire, and Slavs (to cut it short).

    paleo-Balkanians were indeed similar to modern NW Italians, Corsicans and Iberians, only after that to Albanians and Greeks.
    i'm talking about most of the other paleo-Balkan samples we have, from Croatia, Bulgaria, some from Hungary etc.

    so the Moldovan ia samples being the closest to NW Italians too, and distant from modern Balkanians, wouldn't be weird or ridiculous at all.

    but, it's still possible that an Albanian-like mix occured in IA Moldova, by SW-Euro-like people mixing with some atypical Scythians or Sarmatians. that's why i don't completely discard the other version yet.

    Quote Originally Posted by Ion Basescul View Post
    Bonus, which is self-explanatory really:

    Target: vbn(serb)
    Distance: 9.5890% / 9.58895517
    64.4 AV1_Hungary_Avar_1361_ybp
    35.6 ScythianMoldova_SCY197_Moldova_288502632_BC


    Target: vbn(serb)
    Distance: 5.4774% / 5.47740755
    55.6 AV1_Hungary_Avar_1361_ybp
    44.4 scy197_Moldova_Scythian.SG_1650_ybp
    there is one problem with this:


    the small circle is where we find Albanian like samples in the Iron age. (maybe)
    the big circle is where we find SW European like ones.

    modern population from the big circle can be shown as:

    SW-Euro-like paleo-Balkanians
    + Imperial Roman samples
    + Slavs.

    with very a small distance, too.

    now tell me which makes more sense: this 3-way mix i propose, or that the Slavs mixed with an atypical population (which might have not existed at all) living on a very small area in Moldova , and then this mix settled the entire Balkans and completely wiped out the previous population there?

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