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I have some vcf files (unrelated to these) with alleles like this:
2 rs199533309 0 181536688 AATATTTTTATAGTTTG A
how do you deal with that? just delete the whole variant? I tried converting with plink and dnakitstudio, the outputs of both of them contain those AATAT.. variants.


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I have some supposition: https://en.wikipedia.org/wiki/Hennadiy_Moskal
Hennadiy Hennadiyovych Moskal (Ukrainian: Геннадій Геннадійович Москаль; born 11 December 1950) is a Ukrainian politician and the former governor of Zakarpattia Oblast, serving from 2015 to 2019
Gennadiy Gennadiyovych Moskal was born on 11 December 1950 in Zadubrivka, Zastavna Raion, Chernivtsi Oblast into a family of public servants. His father, Gennady Hadeyovych Hayfulin (or Hayfullin), was an ethnic Tatar. His mother, Stepaniya Pavlivna Moskal, was an ethnic Ukrainian.



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This person hypothetically can have some Moldavian ancestry, which can explain his results. In the village from where he originate, based of 2001 census, is recorded a person of Moldavian ancestry.Ukraine_Ternopilska:Berezhany_district_Narajiv_EG6 00011,25.32,33.56,16.87,10.64,10.14,0.02,0.00,0.88 ,1.92,0.31,0.25,0.04,0.05
https://uk.wikipedia.org/wiki/%D0%9D...D)#cite_note-9
http://database.ukrcensus.gov.ua/MUL...1&multilang=uk


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