qpAdm thread

**Zoro** · 01-06-2021, 09:22 PM

I’m out of here. You can thank and consult with ignoramus Token who has spent years doing qpAdm

**Token** · 01-06-2021, 09:24 PM

Zoro is the typical case of a person who knows how to use qpAdm, but has no idea why he is using it that way.

**vbnetkhio** · 01-06-2021, 09:35 PM

Originally Posted by Zoro

I’m out of here. You can thank and consult with ignoramus Token who has spent years doing qpAdm

well that's unfortunate, I wanted to hear both sides and try out both yours and his advice.

**vbnetkhio** · 01-06-2021, 09:37 PM

Originally Posted by Token

Are these potential sources of ancestry for pleft pops? If no, the you don't need them. If Sunghir shows some Siberian admixture (which can be tested with G25), then it might be a good idea to include Devils Gate.

I plan to check later if any Siberian or Eastern Steppe samples fit into the model. But first i want to find the best sources for the Balto-Slavic and PaleoBalkan/Greco-Roman ancestry.

**Token** · 01-06-2021, 09:52 PM

....

**Kaazi** · 01-07-2021, 12:03 AM

Originally Posted by vbnetkhio

a new version of ADMIXTOOLS is out:
https://uqrmaie1.github.io/admixtools/index.html

it's faster and more user friendly.

has anybody tried it out yet?

can you teach how to use it?

**vbnetkhio** · 01-07-2021, 08:11 AM

Originally Posted by Kaazi

can you teach how to use it?

first install rstudio:
https://rstudio.com/products/rstudio/download/

then just follow these instructions:
https://uqrmaie1.github.io/admixtools/index.html

**~~JamesBond007~~** · 01-08-2021, 01:10 PM

I got it working but it was a major pain in the ass like a death by a thousand paper cuts. Not using admixtools2 etc... per se but merging plink files and extracting them via Rstudio etc... I was hacking shell and perl scripts up all night etc.... jeez !

**~~JamesBond007~~** · 01-08-2021, 01:12 PM

Originally Posted by vbnetkhio

first install rstudio:
https://rstudio.com/products/rstudio/download/

then just follow these instructions:
https://uqrmaie1.github.io/admixtools/index.html

Normal people can't do this shit you have to be either a geneticist or the tech geek elite

**vbnetkhio** · 01-08-2021, 10:01 PM

Originally Posted by JamesBond007

I got it working but it was a major pain in the ass like a death by a thousand paper cuts. Not using admixtools2 etc... per se but merging plink files and extracting them via Rstudio etc... I was hacking shell and perl scripts up all night etc.... jeez !

nice! are those reference populations from the Reich lab dataset? I can send you Danish, Irish, Welsh etc. if you are interested