Vahaduo calcs vol.2

[Dušan]

I removed duplicate samples, unecessary suffixes like .brother, .sister, .SG, and low qualitiy samples from Komintasavalta's sheet, and replaced HO samples with 1240k where available.
These can be added if everybody agrees.

k13 ancient averages:
https://pastebin.com/jLR2NNNJ

k13 ancient individuals:
part1: https://pastebin.com/bwNidkpb
part2: https://pastebin.com/yMt3n75V

Lets try them


Target: Dušan
Distance: 1.3999% / 1.39990236 | ADC: 0.25x RC
29.0 Ukraine_Viking_o
21.4 Ukraine_Medieval
18.9 Ukraine_Cimmerians
12.4 Germany_SouthernGermany_Singen_IA
12.3 Spain_Carolingian
6.0 Turkey_Hellenistic_WestMediterranean


Target: Dušan
Distance: 1.8638% / 1.86384717 | ADC: 0.5x RC
49.1 Ukraine_Viking_o
28.0 Italy_Medieval_o1
10.8 Turkey_Hellenistic_WestMediterranean
6.8 Spain_Carolingian
5.3 Germany_SouthernGermany_Singen_IA

[Leto]

Don't spam this thread too much, folks. When Lukasz finally comes, he will overlook my shit again because of multiple unrelated posts

[Leto]

Global25 scaled coordinates simulated with Genoplot from the unofficial spreadsheet of modern Eurogenes K13 populations (to be taken with a grain of salt)

https://pastebin.com/raw/f8VgGQgB

Can you replace Tajik_Mountain and Tajik_Lowland with this one?

Tajik,9.77,12.89,0.80,36.11,9.68,0.61,14.46,4.67,7.87,2.21,0.34,0.37,0.22

[vbnetkhio]

here's another version, I added the "contam" tag to ~100 contaminated samples, I think it's important to separate them.

avg
https://pastebin.com/txVjJPtW

individuals
https://pastebin.com/JVbTnj4e
https://pastebin.com/GWR9qw2n

[Ajeje Brazorf]

Can you replace Tajik_Mountain and Tajik_Lowland with this one?

Tajik,9.77,12.89,0.80,36.11,9.68,0.61,14.46,4.67,7.87,2.21,0.34,0.37,0.22

Simulated coords:

Tajik_simulated,0.0895,0.0158,-0.0287,0.026,-0.0489,0.0119,0.0009,-0.0004,-0.0265,-0.0229,-0.0078,0.0025,-0.0023,-0.0113,0.0058,0.0095,0.0009,0.0016,0.0022,-0.0074,-0.0071,0.0013,-0.0012,-0.0032,-0.0001

PCA:

Spoiler!

[Lucas]

Just a reminder of this little update from pages back please Lucas.



And could you fix the spelling for Scottish_Gaidhealtachd, some clown put a question mark in the name.

done

[Lucas]

Please replace Tajik_Lowland and Tajik_Mountain for K13 with this single average. A few of those samples were mislabeled and confused

Tajik,9.77,12.89,0.80,36.11,9.68,0.61,14.46,4.67,7.87,2.21,0.34,0.37,0.22

And also delete this outdated one from K12b, I've already asked you

Moldovan_South,5.48,1.07,1.32,0.49,25.95,33.71,0.26,0.06,6.56,0.31,24.67,0.12

done

[Lucas]

here's another version, I added the "contam" tag to ~100 contaminated samples, I think it's important to separate them.

avg
https://pastebin.com/txVjJPtW

individuals
https://pastebin.com/JVbTnj4e
https://pastebin.com/GWR9qw2n

I had brilliant idea I think
No more waiting for my updates! I took those sheets using some code on website directly from pastebin.

So for K13 ancient average and individuals vbknethio now how the POWERS to edit sheets directly in Pastebin and changes are visible on page in the same time

New page for K13 Ancient individual (doesn't matter sheet is in two parts I added simply two codes lol...)
https://vahaduo.genetics.ovh/Eurogen...d-vahaduo.html

Then Leto you could create your pastebin (but when logged remember, to have ability to edit later) for Dod and I will add that address too to page.

Who wants to be curator of 13 and K15? Maybe Creoda, Basecul or Feiichy? So create your pastebin accounts and add sheets.

I can even divide oracles to few regional parts and few users could be responsible for their regional refs respectively. Just discuss it... So there will be truly community driven oracles

I wanted to do such thing before but I theorized to gave someone access to my ftp server which would be too dangerous, no it is safe and easy as fuck.

[Jana]

here's another version, I added the "contam" tag to ~100 contaminated samples, I think it's important to separate them.

avg
https://pastebin.com/txVjJPtW

individuals
https://pastebin.com/JVbTnj4e
https://pastebin.com/GWR9qw2n

this is awesome, very clean and tidy. Labeling is top notch. Just one question, which Czech early Slav plots like this? Are these Pohansko samples perhaps?


Distance to: Czech_EarlySlav

3.03507825 Lithuanian_Aukštaitija
3.88985861 Russian_Pskov
4.19267218 Belarusian_Minsk
5.01840612 Russian_Smolensk
5.03247454 Lithuanian_Žemaitija
5.04240022 Belarusian
5.35506302 German_East_Prussia_Memelland
5.76012153 Russian_Tver-Yaroslavl
6.71172109 Russian
6.97797248 Russian_Ryazan
7.27810415 Russian_Kostroma
7.35751317 Russian_Southwest
7.57374412 Russian_Kargopol
7.63959423 Polish_Mazovia
7.77322327 Polish_Podlaskie
7.81606679 Estonian
7.83093864 Latvian
8.00645989 Ukrainian_Northwest
8.27565707 Ukrainian_North
8.55634852 Polish
8.56687808 Ukrainian
8.94566375 Russian_North
9.02390714 Polish_Kujavia
9.18163929 Mordvin
10.18841499 German_East_Prussia_Masuria

[Lucas]

this is awesome, very clean and tidy. Labeling is top notch. Just one question, which Czech early Slav plots like this? Are these Pohansko samples perhaps?


a

Feichy you want be responsible for k13? Look post above.