Ancient Australians

[Peterski]

Are Ancient Australian samples available in G25 already? I can't see them in David's official spreadsheet yet:

https://drive.google.com/file/d/1Urh...taCM7PFw1/view

I'm talking about samples such as these:

KP1
KP2
MH6
MH7
MH8
PA86
PA109
WLH4
WPAH4

Also, there is a new BK1 sample, does anyone have a bed/bim/fam PLINK format fileset with this sample?:

https://umap.openstreetmap.fr/en/map...387/142.500916

[Peterski]

I'm not sure if you guys noticed, but Aboriginal Australians seem to have South Asian admixture that is absent from Papuans. For example here are the results of 16 Aborigines in Eurogenes K15, notice the high South Asian and some Southeast Asian:

https://i.postimg.cc/by2hxMtb/Aborigine-K15.png



This seems to be in line with what this 2013 study found out:

https://pubmed.ncbi.nlm.nih.gov/23319617/

Pugach et al., "Genome-wide data substantiate Holocene gene flow from India to Australia"

[Mr. M]

Australia_Barham_1600BP-1400BP:KP1__AD_350__Cov_unknown,-0.043253,-0.227479,-0.202137,0.222871,0.131101,-0.331043,0.00235,-0.002769,-0.011453,-0.006378,-0.004709,0.007793,-0.001338,-0.000963,-0.006379,-0.002917,0.004042,0.004561,0.000377,0.002876,-0.000125,-0.004699,-0.002958,0.000843,-0.002275
Australia_NSW_PreEuropean.SG:KP2.SG__AD_410__Cov_22.86%,-0.03187,-0.215292,-0.194971,0.223194,0.136949,-0.311521,-0.00188,0.001385,0.003886,0.002005,-0.003248,-0.005095,-0.002973,-0.007432,-0.004614,0.003447,0.004303,0.005701,0.005279,0.008504,0.001123,0.008903,-0.010106,-0.005904,-0.002275
Australia_NQueensland_PreEuropean.SG:PA86.SG__AD_1099__Cov_94.15%,-0.039838,-0.232556,-0.211942,0.233853,0.149259,-0.340804,-0.00235,0.004846,-0.01268,-0.00656,-0.008444,0.008243,0.001338,0.002064,-0.014794,-0.004906,0.007171,0.00076,0,0.006503,-0.001123,0.004699,-0.004067,0.001446,-0.002515
Australia_NQueensland_PreEuropean.SG:WPAH4_merged.SG__AD_1099__Cov_24.95%,-0.045529,-0.223416,-0.205154,0.219964,0.130486,-0.317656,0.00799,0.004154,-0.006954,-0.007472,-0.012666,-0.003297,0.003271,-0.007982,0.002036,0.003182,0.010952,0.000633,-0.002765,0.005002,-0.000749,0.008408,-0.010353,0.00241,-0.001078
Australia_NSW_PreEuropean.SG:WLH4_L3.SG__AD_1099__Cov_26.71%,-0.042115,-0.228494,-0.204399,0.222225,0.145566,-0.32435,-0.008695,0.016153,-0.001227,0.003827,-0.004547,-0.002248,0.004311,0.000413,-0.010179,-0.004508,0.002999,-0.000887,-0.013073,-0.003627,0.001248,-0.008037,-0.001109,-0.006868,-0.0097
Australia_Queensland_PreEuropean.SG:MH6_merged.SG__AD_1099__Cov_30.58%,-0.05122,-0.237634,-0.205531,0.226424,0.137256,-0.334948,0.011751,0.000462,-0.005113,-0.004374,-0.00406,-0.013338,0.002081,-0.002202,-0.006515,0.005569,0.005607,0.006968,0.003897,0.012256,-0.001373,-0.007172,-0.002958,-0.005543,-0.006586
Australia_Queensland_PreEuropean.SG:MH7_merged.SG__AD_1099__Cov_9.84%,-0.044391,-0.227479,-0.202137,0.207044,0.132025,-0.314868,0.00658,0.007615,0.004295,0.01221,-0.009256,-0.013638,0.00996,0.007294,0.002172,0.000928,0.001695,0.002534,0.011061,-0.001376,-0.002995,-0.001607,0.013311,-0.00494,-0.017843
Australia_Queensland_PreEuropean.SG:MH8_merged.SG__AD_1099__Cov_91.82%,-0.035285,-0.232556,-0.211565,0.229654,0.134179,-0.330207,0.00047,0.006923,-0.008999,-0.003645,-0.011042,-0.001049,0.008474,0.001239,-0.005022,0.00053,-0.000391,0.005954,0.00352,0.0005,-0.000374,-0.001855,0.001479,-0.002651,-0.003113
Australia_Queensland_Aborigine:King_Ng_tja__AD_1904__Cov_18.22%,-0.034147,-0.237634,-0.209679,0.230946,0.153875,-0.335505,-0.00564,0.00923,-0.009204,0.000364,0.001949,0.001349,0.007433,-0.003028,-0.006107,-0.000133,0.003651,-0.011909,-0.008799,-0.003877,0.00574,-0.008408,-0.009737,0.001687,0.001557

[Peterski]

Thanks! Which study is the King Ng:tja sample from?

[J. Ketch]

I'm not sure if you guys noticed, but Aboriginal Australians seem to have South Asian admixture that is absent from Papuans. For example here are the results of 16 Aborigines in Eurogenes K15, notice the high South Asian and some Southeast Asian:

https://i.postimg.cc/by2hxMtb/Aborigine-K15.png



This seems to be in line with what this 2013 study found out:

https://pubmed.ncbi.nlm.nih.gov/23319617/

Pugach et al., "Genome-wide data substantiate Holocene gene flow from India to Australia"

Do you notice an Indian influence in Abo's outside of genetics?

[Peterski]

Do you notice an Indian influence in Abo's outside of genetics?

Maybe they were the ones who introduced the Dingo to Australia?

But when using G25 coordinates Southeast Asian is more prevalent:

In my Last Glacial Maximum calculator (after removing Sahulian_AUS pop. from references) they score like this:
More Southeast_Asian (which is based on Hoabinhians and Leang Panninge) than South Asian (AASI Simulated):

https://www.exploreyourdna.com/calcu...tr-kapuscinski

https://i.postimg.cc/x9tbksH7/Aborigines-G25.png

[Peterski]

There is one more sample in Ajeje's spreadsheet:

Australia_Western_Kalgoorlie_Aboriginal:AusAboriginal__AD_1900__Cov_73.50%,-0.045529,-0.226463,-0.203268,0.226101,0.134487,-0.323513,0.00141,-0.000231,-0.003272,-0.002551,-0.002923,0.000599,0.002527,-0.005367,-0.003529,-0.005304,0.007562,0.009502,-0.001383,0.007253,0.002121,-0.000495,0.00419,-0.005181,-0.005508

[Peterski]

I uploaded some modern Aborigines to GEDmatch:

Kit Number: ZP2971973
Name: *Native Australian A

Kit Number: MD4856439
Name: *Native Australian B

Kit Number: KF6048056
Name: *Native Australian C

Kit Number: RL5573821
Name: *Native Australian D

Kit Number: AP5217294
Name: *Native Australian E

Also if you are interested here are some Australians with partially Aboriginal ancestry:

T937735
T562249
T027283
M882187
A919887
A773539
H329101
A790363