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Last night I finally decided to pay for RAW file imputation (extending) on DNAgenics. I've heard some mixed feelings about whether it is good or not - some people say it was pointless, some say it gave them clearer results. It gave me two files: one 30 million SNPs and a second one 2.5 million SNPs, which is meant for uploading on third party sites.
For "science" I've decided to do it and uploaded it to illustrativeDNA to get coordinates and to compare results with my original RAW. I'm starting this thread early and will keep you updated when things come out!
In the meantime, has any of you imputed RAW files before? What were your impressions?
Here is a k13 comparison of my original RAW and the IMPUTED RAW :
Original:
Imputed RAW:
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