USC admixCalc, GPS Tool and reAdmix^2

[Not a Cop]

University of Southern California’s Geographic Population Structure Prediction tool.

This tool has 3 options:
1st is Positioning you on google maps.
2nd models you as a mixture of 2 populations, also shows them on google maps.
3rd Models you as a mixture of various populations.

How to use:

1. Register here : http://chcb.saban-chla.usc.edu/admixCalc/index.php/home
2. Upload your raw data and calculate (takes a couple minutes).
3. Enter your results here (http://chcb.saban-chla.usc.edu/gps/index.php) choose the option you want to know and enjoy your results.

[Not a Cop]

My results:

http://s018.radikal.ru/i521/1501/5d/5718427346fc.png (http://www.radikal.ru)

http://s017.radikal.ru/i407/1501/b6/66b0cf95f9ce.png (http://www.radikal.ru)[/QUOTE]

[Jackson]

First one kinda makes sense for you i guess, gets the Russian and German, are the proportions correct?

[Not a Cop]

First one kinda makes sense for you i guess, gets the Russian and German, are the proportions correct?

Proportions on pic are drawn by me, i'm still unsure if i'm 1\4 or 1\8. But mapping is more or less correct i think. The two pops method don't catch either of my sides, but considering that N. Russians are close to Finns and Germans to Norwegians it makes sense, at least in general direction.

[Jackson]

I got 'Luxembourgish' which is kinda close, although it put me in central-eastern France, which doesn't seem to make sense.

For K=9
Component 1 0.000014
Component 2 0.409473
Component 3 0.000014
Component 4 0.230946
Component 5 0.024814
Component 6 0.000010
Component 7 0.009111
Component 8 0.325607
Component 9 0.000010

[Jackson]

Is it possible to select two or more populations within Europe? Seems that you can only select from different continents...

Edit: Nevermind, holding down ctrl does the trick. :)

[Not a Cop]

Is it possible to select two or more populations within Europe? Seems that you can only select from different continents...

Edit: Nevermind, holding down ctrl does the trick. :)

Try not to select any pops or select some East-Asian and Unconfident, this way calc will be less biased.

What's your GPS btw?

[Jackson]

And for my Grandfather his closest population was Belgian, and yet the GPS points into the middle of the north sea...I'm not sure how accurate this is.

[Jackson]

Ah, managed to get the two population one working, for my Grandfather the two populations are Frisian and Bulgarian. For me the two populations are Luxembourgish and Bavarian. For the GPS it assigned me as Luxembourgish and my Grandfather as Belgian. I'll do more family members shortly.

[Jana]

Hmmm it lands me in deep South Serbia, Leskovac heh:p. On23andme and GEDmatch I cluster with Hungarians, but here my distant Greek/Serb ancestry dragged me southeast I think. Cool tool anyway

http://i.imgur.com/R2uHfrE.png

[Jackson]

Ok i did what you suggested, i get 88.7% Bavarian, 6.5% Abkhazian and 4.8% Swedish.
My Grandfather gets 78.8% Bavarian, 16.6% Tuscan and 4.6% Abkhazian. That doesn't really make sense as he is always to the north-east of me.

[Graham]

I got 'Luxembourgish' which is kinda close, although it put me in central-eastern France, which doesn't seem to make sense.

For K=9
Component 1 0.000014
Component 2 0.409473
Component 3 0.000014
Component 4 0.230946
Component 5 0.024814
Component 6 0.000010
Component 7 0.009111
Component 8 0.325607
Component 9 0.000010

It nearly makes sense, if you compare it to what you get on Eurogenes. Though at bit more Med.

[Stanley]

Wait, which component's which when you enter it into the GPS tool?

[Jackson]

It nearly makes sense, if you compare it to what you get on Eurogenes. Though at bit more Med.

Yeah it's close, the GPS is not far off, although the markers are. Luxembourg and Belgium are not too far away.

[Not a Cop]

Wait, which component's which when you enter it into the GPS tool?

First you do 1st column, than second

[Not a Cop]

Yeah it's close, the GPS is not far off, although the markers are. Luxembourg and Belgium are not too far away.

Could you please also share coordinates? I've had an idea of putting apricians on the map.

[Stanley]

I'm getting Ruthenian, then for two populations Highland Scottish + Bosniak.

Did I do this right? Jackson's components aren't too far away from mine, yet we plot wildly different.


For K=9
Component 1 0.000014
Component 2 0.409473
Component 3 0.000014
Component 4 0.230946
Component 5 0.024814
Component 6 0.000010
Component 7 0.009111
Component 8 0.325607
Component 9 0.000010

For K=9
Component 1 0.015594
Component 2 0.391891
Component 3 0.000010
Component 4 0.239127
Component 5 0.022805
Component 6 0.000010
Component 7 0.000466
Component 8 0.330087
Component 9 0.000010

[Oneeye]

Component 1

0.000010


Component 2

0.424387


Component 3

0.000010


Component 4

0.205226


Component 5

0.025228


Component 6

0.009730


Component 7

0.000010


Component 8

0.335389


Component 9

0.000010

[Jackson]

I'm getting Ruthenian, then for two populations Highland Scottish + Bosniak.

Did I do this right? Jackson's components aren't too far away from mine, yet we plot wildly different.



For K=9
Component 1 0.015594
Component 2 0.391891
Component 3 0.000010
Component 4 0.239127
Component 5 0.022805
Component 6 0.000010
Component 7 0.000466
Component 8 0.330087
Component 9 0.000010

Component 2 is Mediterranean, 4 is Southwest Asian and 8 is Northern European, if those are in the right order the rest should be.

[Graham]

Based on the data that you have entered our tool computed your closest population to the British region.

http://www.theapricity.com/forum/attachment.php?attachmentid=54578&d=1422210167http://www.theapricity.com/forum/attachment.php?attachmentid=54577&d=1422210167

[Jackson]

Interesting how i get like 2.5% North American, random.

[Stanley]

Component 2 is Mediterranean, 4 is Southwest Asian and 8 is Northern European, if those are in the right order the rest should be.

Okay then yeah, I'm definitely doing it right.

I'll try this out with my relatives' data later and post the maps.

[Oneeye]

http://i1065.photobucket.com/albums/u399/hammer1115/th_Screenshot3_zpseae76406.png



I also get "Luxembourgish"

[Highlands]

"Based on the data that you have entered our tool computed your closest population to the Ashkenazy Jews G region."
Lol

[Oneeye]

The rest is pretty odd. With the 2 pops, I get Ruthenian and French Basque, and with the multi-deal without giving any ancestry data, I get 100% Iberian. Viva Espana!

[Jackson]

The rest is pretty odd. With the 2 pops, I get Ruthenian and French Basque, and with the multi-deal without giving any ancestry data, I get 100% Iberian. Viva Espana!

Gotta stay true to your Luxembourgish roots!

[Proctor]

"Based on the data that you have entered our tool computed your closest population to the Swiss region. "

With the 2 populations I get Scottish highlands and Basque.

[Ades]

Thanks for sharing.

Unfortunately, it is far from reliable, based on my on results, and some other results I found online.

For instance, one Spanish guy's results I saw plotted him in Greece, while his ancestry is 100% Galicia (northwest Iberia).

[ChocolateFace]

Seems like bs

[Highlands]

# Population Name Latitude Longitude
Ancestral Route 1 Tuscan_2 43 11
Ancestral Route 2 Lebanese_0 33.85 35.86

[Casandrinos]

Seems lame

[Graham]

Dad

http://www.theapricity.com/forum/attachment.php?attachmentid=54581&d=1422217070

Mum

http://www.theapricity.com/forum/attachment.php?attachmentid=54582&d=1422218189

[SwampThing26]

It put me in Bavaria west of Munich on the map for the single and for the two ancestry mix it put one in Eastern France right on the border and one right above Munich.

[Pfeifer]

I'm having problems to calculate my raw data. I'm trying to download the same zip file I used in gedmatch but its not working....

Its writen " upload your genotype file in TEXT format.". What the is this?

[Graham]

I'm having problems to calculate my raw data. I'm trying to download the same zip file I used in gedmatch but its not working....

Its writen " upload your genotype file in TEXT format.". What the is this?

'Unzip' your raw data into Text format.

[Jackson]

Me:
Based on the data that you have entered our tool computed your closest population to the Luxembourgish region.
Calculated Latitude of Origin: 48.1701
Calculated Longitude of Origin: 4.98382

Father:
Based on the data that you have entered our tool computed your closest population to the Bavarian region.
Calculated Latitude of Origin: 49.7111
Calculated Longitude of Origin: 9.43629

Grandfather:
Based on the data that you have entered our tool computed your closest population to the Belgian region.
Calculated Latitude of Origin: 56.4736
Calculated Longitude of Origin: 4.4313

Grandmother:
Based on the data that you have entered our tool computed your closest population to the Belgian region.
Calculated Latitude of Origin: 56.6959
Calculated Longitude of Origin: 4.4306

Mother:
Based on the data that you have entered our tool computed your closest population to the Luxembourgish region.
Calculated Latitude of Origin: 49.0288
Calculated Longitude of Origin: 7.0515

Aunt:
Based on the data that you have entered our tool computed your closest population to the Bavarian region.
Calculated Latitude of Origin: 48.5318
Calculated Longitude of Origin: 10.0866

[Jackson]

Not very good at all, grandparents are yellow and green, father is light blue, i'm red, mother is purple and aunt is brown:

http://i628.photobucket.com/albums/uu7/Brodir93/GPS1.png

[Proctor]

Not very good at all, grandparents are yellow and green, father is light blue, i'm red, mother is purple and aunt is brown:


I think we should just give them some time, they're just starting out, they should improve from this point forward, and they offer their services for free, I think it's alright.

[Jackson]

I think we should just give them some time, they're just starting out, they should improve from this point forward, and they offer their services for free, I think it's alright.

Oh the concept is very good, but it's got a way to go it seems. I'm glad that they've done it, of course.

[Mazik]

I got Latvian as my best match and my grandfather got Chuvash.

[Stanley]

Me + family all get:
"Based on the data that you have entered our tool computed your closest population to the Ruthenian region,"
...with tiny differences in latitude/longitude coordinates.

Two populations: me, brother, dad get Highland Scottish + Bosniak; sister, Ruthenian + Highland Scottish

So, yeah..

http://i1227.photobucket.com/albums/ee427/JH9020/map_zps5af974b7.png
http://i1227.photobucket.com/albums/ee427/JH9020/map2_zpsbe664125.png

http://i1227.photobucket.com/albums/ee427/JH9020/components_zps5c126e5e.png

[Patches]

My Results (Updated):
http://i1154.photobucket.com/albums/p535/PureEvil91/uscgene23_zps10939f90.png (http://s1154.photobucket.com/user/PureEvil91/media/uscgene23_zps10939f90.png.html)

http://i1154.photobucket.com/albums/p535/PureEvil91/uscgene_zps8e373a1c.png (http://s1154.photobucket.com/user/PureEvil91/media/uscgene_zps8e373a1c.png.html)

http://i1154.photobucket.com/albums/p535/PureEvil91/twopop2_zps65f11f15.png (http://s1154.photobucket.com/user/PureEvil91/media/twopop2_zps65f11f15.png.html)

[Pjeter Pan]

For K=9
Component 1 0.000010
Component 2 0.591978
Component 3 0.000010
Component 4 0.234102
Component 5 0.015049
Component 6 0.000010
Component 7 0.008018
Component 8 0.150812
Component 9 0.000010

Based on the data that you have entered our tool computed your closest population to the Ashkenazy Jews G region

http://i57.tinypic.com/2j3pkk4.png

[Pjeter Pan]

im a fucking kike! :(

[Raven_]

http://i62.tinypic.com/2rwark7.jpg

They guess my ancestry correctly in one pop mode.

[7eleven]

Im placed in Greece and my mom in northern part of Lebanon.

[7eleven]

My mothers results:

Ancestral Route 1Lebanese_Batroun_Christian_034.24983235.66429
Ancestral Route 2Cypriot_035.1233.42

[7eleven]

WTF

Population Name Latitude Longitude
Ancestral Route 1 Tuscan_2 43 11
Ancestral Route 2 Ingush_0 40.61 44.895

[DRUM]

Based on the data that you have entered our tool computed your closest population to the Ashkenazy Jews G region.

http://puu.sh/gcWBR/08dcbd091c.jpg

https://i.imgur.com/Zmk4BxN.png

[Alessio]

I see

[Alessio]

It takes ages man..

[Alessio]

It's still running after 15 minutes..:worried1:

[Mortimer]

wanted to say the same takes ages

[Alessio]

wanted to say the same takes ages

It's because we're ''extranjeros''.

It's worse than GEDmatch was before recovery.

[Alessio]

Just log out and then log in again.

[Alessio]

http://s20.postimg.org/8efgw26fd/Untitled.jpg (http://postimg.org/image/8efgw26fd/)

Based on the data that you have entered our tool computed your closest population to the Greek region.
Calculated Latitude of Origin: 38.8893
Calculated Longitude of Origin: 21.1599

For K=9


Component 1

0.004619


Component 2

0.528059


Component 3

0.000010


Component 4

0.233819


Component 5

0.001055


Component 6

0.000010


Component 7

0.000010


Component 8

0.232408


Component 9

0.000010

[Mortimer]

Based on your admixture composition, we found the following ancestral populations
# Population Name Latitude Longitude
Ancestral Route 1 Romanian_2 45.94 24.96
Ancestral Route 2 Italian (South)_0 40.75 14.49

[Alessio]

Dad

http://www.theapricity.com/forum/attachment.php?attachmentid=54581&d=1422217070

Mum

http://www.theapricity.com/forum/attachment.php?attachmentid=54582&d=1422218189

Didn't knew you were a sea mermaid :tongue

[Mortimer]

For K=9
Component 10.011355
Component 20.475550
Component 30.000012
Component 40.335556
Component 50.007828
Component 60.000010
Component 70.076456
Component 80.093223
Component 90.000010

now i try the very mixed and selected punjabi and serbian first i tried the two populations which gave me romanian and italian but thats wrong

[Mortimer]

now i got ashkenazy jews lol

Based on your data input, your most likely ancestral composition consists of 1 population(s)/sub-population(s). Relative contributions are displayed below.
Population/Sub-population Common country for this population/sub-population Ancestral composition
Ashkenazy Jews P_0 Poland 0%

but why 0% is that not a contradiction

[Alessio]

For K=9
Component 10.011355
Component 20.475550
Component 30.000012
Component 40.335556
Component 50.007828
Component 60.000010
Component 70.076456
Component 80.093223
Component 90.000010

now i try the very mixed and selected punjabi and serbian first i tried the two populations which gave me romanian and italian but thats wrong

:picard1:

[Mortimer]

on GPS i get persian
GPS Calculation
Based on the data that you have entered our tool computed your closest population to the Persian region.
Calculated Latitude of Origin: 38.4105
Calculated Longitude of Origin: 48.0257
The region is marked on the map below as markers.

[Nurzat]

it gave me Bulgaria and on two nationalities mode it gave Bulgarian/Bosniak. it has a lag that puts you more to the East and more to the South on the map. that's why Brits get Luxembourg

on Doug McDonald's map I've got both dots in Austria (Oberoesterreich and Burgenland) and on Eurogenes' DIY I've got both dots in Austria again (Oberoesterreich)

[Alessio]

The other (http://chcb.saban-chla.usc.edu/gps/index.php) link.

[Alessio]

https://www.youtube.com/watch?v=NrJMYCroThw

This tool is garbage though from what I've seen at this moment.

[Alessio]

it gave me Bulgaria and on two nationalities mode it gave Bulgarian/Bosniak. it has a lag that puts you more to the East and more to the South on the map. that's why Brits get Luxembourg

on Doug McDonald's map I've got both dots in Austria (Oberoesterreich and Burgenland) and on Eurogenes' DIY I've got both dots in Austria again (Oberoesterreich)

''it has a lag that puts you more to the East and more to the South on the map''

Exactly and in my case ''South East''

[firemonkey]

.

For K=9
Component 1
0.006941
Component 2
0.377743
Component 3
0.036906
Component 4
0.188921
Component 5
0.050700
Component 6
0.003088
Component 7
0.017690
Component 8
0.318001
Component 9
0.000010

[firemonkey]

copied and pasta data in order given in my previous post to readmix gps tool and got


http://i4.photobucket.com/albums/y126/labile/gps%20calculation.png

http://i4.photobucket.com/albums/y126/labile/gps%20map.png

My known ancestry is English,Scottish, and Irish!! I know I was born in the Belgium Congo (my father was a junior British diplomat then) but it's patently ridiculous!!

[firemonkey]

I then did the tool where you can choose several populations and chose British , Irish, Scottish(known ancestry) Welsh( have ancestor born in Wales but not sure if Welsh) Scandinavian(30% according to My origins) and lastly the BiakaPygmy that the GPS tool had given.

This gave http://i4.photobucket.com/albums/y126/labile/ancestral%20composition.png

BiakaPygmy_3 Central African Republic 79.9%

[firemonkey]

Using ftdna autosomal instead of geno 2 was far more accurate.

http://i4.photobucket.com/albums/y126/labile/gps%20calculation%20ftdna.png

http://i4.photobucket.com/albums/y126/labile/gps%20map%20ftdna.png