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Ibericus
04-06-2019, 06:55 PM
Using nMonte with Global 25, I came up with a total european score, based on the following components:


Pre-Steppe Europe:
- Remedello_BA (this represents european farmern ancestry)
- European Hunter-Gatherers (Loschbour, Baltic, Ukraninian, Scandinavian, EHG)

Steppe invaders: Yamnaya Kalmyikia

Total Europe is: Pre-Steppe + Steppe invaders.

For non-european ancestry : Iranian Chalcolithic, Levant Chalcolithic, North-African and East-Eurasian.


Here is the table for many selected populations:


https://i.ibb.co/7v2c3qz/EUro-global.png

Kaspias
04-06-2019, 07:01 PM
Would you mind to share reference csv or are we going to post our coordinates?

karakartal
04-06-2019, 07:17 PM
I'm Balkan Turk. If you want, i'll share my coordinates for your table.

Cumansky
04-06-2019, 07:20 PM
Can you run for me?

FilhoV
04-06-2019, 08:09 PM
Using nMonte with Global 25, I came up with a total european score, based on the following components:


Pre-Steppe Europe:
- Remedello_BA (this represents european farmern ancestry)
- European Hunter-Gatherers (Loschbour, Baltic, Ukraninian, Scandinavian, EHG)

Steppe invaders: Yamnaya Kalmyikia

Total Europe is: Pre-Steppe + Steppe invaders.

For non-european ancestry : Iranian Chalcolithic, Levant Chalcolithic, North-African and East-Eurasian.


Here is the table for many selected populations:


https://i.ibb.co/7v2c3qz/EUro-global.png

Run mine mate


,PC1,PC2,PC3,PC4,PC5,PC6,PC7,PC8,PC9,PC10,PC11,PC1 2,PC13,PC14,PC15,PC16,PC17,PC18,PC19,PC20,PC21,PC2 2,PC23,PC24,PC25
Filho_V_scaled,0.094473,0.15436,0.034695,-0.011628,0.043085,-0.006414,-0.0094,0.000692,0.016975,0.028247,0.002111,0.00644 4,-0.015758,-0.010322,0.003664,-0.009944,0.000652,-0.005448,-0.003142,-0.002626,0.003119,0.000124,-0.001849,-0.001205,-0.003233

,PC1,PC2,PC3,PC4,PC5,PC6,PC7,PC8,PC9,PC10,PC11,PC1 2,PC13,PC14,PC15,PC16,PC17,PC18,PC19,PC20,PC21,PC2 2,PC23,PC24,PC25
Filho_V,0.0083,0.0152,0.0092,-0.0036,0.014,-0.0023,-0.004,0.0003,0.0083,0.0155,0.0013,0.0043,-0.0106,-0.0075,0.0027,-0.0075,0.0005,-0.0043,-0.0025,-0.0021,0.0025,0.0001,-0.0015,-0.001,-0.0027

Aren
04-07-2019, 01:00 AM
What is the North African average you are using?
Also why only use pre-Steppe sample from Southern Europe and not TRB or GAC samples aswell?

Edit:
Steppe is overestimated for several Southern European averages due to the fact that you are using only Remedello_BA which has low HG-related ancestry in comparison to EBA farmer averages from Central Europe(since Steppe people did not arrive to West-Central Europe un-admixed obviously).

A more accurate rune IMO

"distance%=2.2041"

Spanish_Aragon

Iberia_Central_CA,31.2
Poland_GAC,27.6
Yamnaya_Kalmykia,26.4
Anatolia_EBA_Isparta,10.2
Guanche_Canary_Islands,4.6

"distance%=2.0264"

Italian_Bergamo

Poland_GAC,30.2
Yamnaya_Kalmykia,25.2
Anatolia_EBA_Isparta,24.6
Remedello_BA,20

FilhoV
04-07-2019, 01:40 AM
What is the North African average you are using?
Also why only use pre-Steppe sample from Southern Europe and not TRB or GAC samples aswell?

Edit:
Steppe is overestimated for several Southern European averages due to the fact that you are using only Remedello_BA which has low HG-related ancestry in comparison to EBA farmer averages from Central Europe(since Steppe people did not arrive to West-Central Europe un-admixed obviously).

A more accurate rune IMO

"distance%=2.2041"

Spanish_Aragon

Iberia_Central_CA,31.2
Poland_GAC,27.6
Yamnaya_Kalmykia,26.4
Anatolia_EBA_Isparta,10.2
Guanche_Canary_Islands,4.6

"distance%=2.0264"

Italian_Bergamo

Poland_GAC,30.2
Yamnaya_Kalmykia,25.2
Anatolia_EBA_Isparta,24.6
Remedello_BA,20

Please run my coordinates using those populations they are posted in this thread

Aren
04-07-2019, 02:07 AM
Please run my coordinates using those populations they are posted in this thread

"distance%=2.3599"

Filho_V_scaled

Poland_GAC,44
Yamnaya_Kalmykia,20.6
Anatolia_EBA_Isparta,17.6
Guanche_Canary_Islands,14.4
Iberia_Central_CA,3.4

"distance%=2.5722"

Filho_V_scaled

Remedello_BA,54.4
Yamnaya_Kalmykia,30.2
Guanche_Canary_Islands,14
Levant_ChL,1.4

Coastal Elite
04-07-2019, 02:15 AM
Could someone please run mine. Thanks in advance.

,PC1,PC2,PC3,PC4,PC5,PC6,PC7,PC8,PC9,PC10,PC11,PC1 2,PC13,PC14,PC15,PC16,PC17,PC18,PC19,PC20,PC21,PC2 2,PC23,PC24,PC25
Daco_Celtic_scaled,0.133173,0.13405,0.043369,0.022 61,0.028313,0.01004,0.00235,0.004384,0.002863,0.00 6014,-0.00747,0.008243,-0.014123,-0.004542,0.004072,-0.000796,0.001043,-0.00076,0.006913,-0.002876,-0.001123,0.004699,0.005423,0.00976,-0.005628

,PC1,PC2,PC3,PC4,PC5,PC6,PC7,PC8,PC9,PC10,PC11,PC1 2,PC13,PC14,PC15,PC16,PC17,PC18,PC19,PC20,PC21,PC2 2,PC23,PC24,PC25
Daco_Celtic,0.0117,0.0132,0.0115,0.007,0.0092,0.00 36,0.001,0.0019,0.0014,0.0033,-0.0046,0.0055,-0.0095,-0.0033,0.003,-0.0006,0.0008,-0.0006,0.0055,-0.0023,-0.0009,0.0038,0.0044,0.0081,-0.0047

FilhoV
04-07-2019, 02:44 AM
"distance%=2.3599"

Filho_V_scaled

Poland_GAC,44
Yamnaya_Kalmykia,20.6
Anatolia_EBA_Isparta,17.6
Guanche_Canary_Islands,14.4
Iberia_Central_CA,3.4

"distance%=2.5722"

Filho_V_scaled

Remedello_BA,54.4
Yamnaya_Kalmykia,30.2
Guanche_Canary_Islands,14
Levant_ChL,1.4

Thanks mate

Ibericus
04-07-2019, 01:05 PM
What is the North African average you are using?
Also why only use pre-Steppe sample from Southern Europe and not TRB or GAC samples aswell?

Edit:
Steppe is overestimated for several Southern European averages due to the fact that you are using only Remedello_BA which has low HG-related ancestry in comparison to EBA farmer averages from Central Europe(since Steppe people did not arrive to West-Central Europe un-admixed obviously).

A more accurate rune IMO

"distance%=2.2041"

Spanish_Aragon

Iberia_Central_CA,31.2
Poland_GAC,27.6
Yamnaya_Kalmykia,26.4
Anatolia_EBA_Isparta,10.2
Guanche_Canary_Islands,4.6

"distance%=2.0264"

Italian_Bergamo

Poland_GAC,30.2
Yamnaya_Kalmykia,25.2
Anatolia_EBA_Isparta,24.6
Remedello_BA,20

- Globular Amphora have some small steppe in them, also i wanted to separate additional WHG from farmer ancestry
I used Remedello because its not too early (like Anatolia Barcin) but not too much hunter-admixed,
- Guanches have abundant euro-neolithic farmer ancestry in them thus the north-african will be inflated. I used Saharawi because they are less euro-admixed
- Anatolia EBA also have high farmer ancestry so they will "steal" some of it from the other farmer component , thats why i used Levant_Chl for near-est together with Iran_Chl

Grace O'Malley
04-07-2019, 01:14 PM
Could someone run mine when they get the chance? Thanks in advance.

,PC1,PC2,PC3,PC4,PC5,PC6,PC7,PC8,PC9,PC10,PC11,PC1 2,PC13,PC14,PC15,PC16,PC17,PC18,PC19,PC20,PC21,PC2 2,PC23,PC24,PC25
Grace_scaled,0.138864,0.136081,0.064488,0.052003, 0.036314,0.017291,0.001645,0.006231,0.004909,-0.00328,-0.009094,0.004646,-0.011298,-0.009771,0.029994,0.005701,-0.007041,-0.004434,0.000377,0.007879,0.007112,0.007296,-0.005793,0.010845,-0.000479


,PC1,PC2,PC3,PC4,PC5,PC6,PC7,PC8,PC9,PC10,PC11,PC1 2,PC13,PC14,PC15,PC16,PC17,PC18,PC19,PC20,PC21,PC2 2,PC23,PC24,PC25
Grace_unscaled,0.0122,0.0134,0.0171,0.0161,0.0118 ,0.0062,0.0007,0.0027,0.0024,-0.0018,-0.0056,0.0031,-0.0076,-0.0071,0.0221,0.0043,-0.0054,-0.0035,0.0003,0.0063,0.0057,0.0059,-0.0047,0.009,-0.0004

Grace O'Malley
04-07-2019, 01:50 PM
This is what I've gotten. I don't know all the samples that Ibericus used.

"fit": 4.096,
"Yamnaya_Kalmykia": 52.5,
"Remedello_BA": 38.33,
"SHG": 5,
"Loschbour": 4.17,
"Baltic_HG": 0,
"EHG": 0,
"Iberomaurusian": 0,
"Levant_ChL": 0,

This is using Aren's model.

"fit": 3.5531,
"Yamnaya_Kalmykia": 52.5,
"Globular_Amphora_Poland": 47.5,
"Anatolia_EBA_Isparta": 0,
"Remedello_BA": 0,

I think from all the models I've seen that Irish are right up there as far as Yamnaya component.

Imperator Biff
04-07-2019, 02:14 PM
Cool model, would be very appreciative thanks.

,PC1,PC2,PC3,PC4,PC5,PC6,PC7,PC8,PC9,PC10,PC11,PC1 2,PC13,PC14,PC15,PC16,PC17,PC18,PC19,PC20,PC21,PC2 2,PC23,PC24,PC25
Imperator_Biff_scaled,0.133173,0.139128,0.061094,0 .04845,0.03416,0.013108,0.005875,0.001846,0.007363 ,0.006378,-0.005359,0.010191,-0.018731,-0.017616,0.027823,0.003845,-0.011604,0.005701,-0.002514,0.000875,0.007986,0.002473,-0.008381,0.022292,0.003832

,PC1,PC2,PC3,PC4,PC5,PC6,PC7,PC8,PC9,PC10,PC11,PC1 2,PC13,PC14,PC15,PC16,PC17,PC18,PC19,PC20,PC21,PC2 2,PC23,PC24,PC25
Imperator_Biff,0.0117,0.0137,0.0162,0.015,0.0111,0 .0047,0.0025,0.0008,0.0036,0.0035,-0.0033,0.0068,-0.0126,-0.0128,0.0205,0.0029,-0.0089,0.0045,-0.002,0.0007,0.0064,0.002,-0.0068,0.0185,0.0032

celticdragongod
04-07-2019, 04:53 PM
Please run mine if not too much trouble. Thanks.

,PC1,PC2,PC3,PC4,PC5,PC6,PC7,PC8,PC9,PC10,PC11,PC1 2,PC13,PC14,PC15,PC16,PC17,PC18,PC19,PC20,PC21,PC2 2,PC23,PC24,PC25
cdg_scaled,0.134311,0.135065,0.063356,0.04845,0.03 7545,0.019801,0.003995,0.010153,0.007363,0.000911,-0.003735,0.006294,-0.01442,-0.009358,0.020222,-0.000133,-0.014342,0,0.007793,0.006628,-0.000374,0.000989,0.008258,0.016629,-0.001437

,PC1,PC2,PC3,PC4,PC5,PC6,PC7,PC8,PC9,PC10,PC11,PC1 2,PC13,PC14,PC15,PC16,PC17,PC18,PC19,PC20,PC21,PC2 2,PC23,PC24,PC25
cdg,0.0118,0.0133,0.0168,0.015,0.0122,0.0071,0.001 7,0.0044,0.0036,0.0005,-0.0023,0.0042,-0.0097,-0.0068,0.0149,-0.0001,-0.011,0,0.0062,0.0053,-0.0003,0.0008,0.0067,0.0138,-0.0012

Not a Cop
04-07-2019, 10:21 PM
Using nMonte with Global 25, I came up with a total european score, based on the following components:



Do you have any idea of increased Levant among Slavs?

firemonkey
04-07-2019, 10:24 PM
Please run my father's and mine.


Tim_G_scaled,0.129758,0.131003,0.064865,0.047158,0 .043393,0.019243,0.002585,0.003,0.006954,-0.000547,-0.002598,0.005095,-0.010406,-0.011147,0.027823,0.006364,-0.021253,0.005828,0.001885,0.001751,0.004367,0.001 855,-0.002218,0.008555,-0.003113

Tim_G_father_scaled,0.137726,0.139128,0.060339,0.0 39406,0.044008,0.017291,0.00517,0.011538,0.007772,-0.001276,-0.002923,0.004646,-0.010109,-0.003991,0.029858,0.001724,-0.021122,0.005448,0.002514,0.007003,0.009234,0.003 833,-0.004067,0.007832,-0.001676

Vasconcelos
04-07-2019, 10:45 PM
- Globular Amphora have some small steppe in them, also i wanted to separate additional WHG from farmer ancestry
I used Remedello because its not too early (like Anatolia Barcin) but not too much hunter-admixed,
- Guanches have abundant euro-neolithic farmer ancestry in them thus the north-african will be inflated. I used Saharawi because they are less euro-admixed
- Anatolia EBA also have high farmer ancestry so they will "steal" some of it from the other farmer component , thats why i used Levant_Chl for near-est together with Iran_Chl

Why not just go for Iberomaurusian or Morocco_EN then? And Kalmykia seems like an odd choice, why not the regular Samara everyone uses?
GAC_Poland is also a better choice than Remedello_BA

Vasconcelos
04-07-2019, 10:47 PM
Double post

Aren
04-07-2019, 11:00 PM
- Globular Amphora have some small steppe in them, also i wanted to separate additional WHG from farmer ancestry
I used Remedello because its not too early (like Anatolia Barcin) but not too much hunter-admixed,
- Guanches have abundant euro-neolithic farmer ancestry in them thus the north-african will be inflated. I used Saharawi because they are less euro-admixed
- Anatolia EBA also have high farmer ancestry so they will "steal" some of it from the other farmer component , thats why i used Levant_Chl for near-est together with Iran_Chl

GAC doesn't have Steppe, it has some very minor EHG. Nevertheless it's the highest WHG admixed farmer group and most Euros strongly prefer GAC when modelled as that's what the Steppe Beakers and the CW mixed with when thye moved West. It's far more relevant for Europeans than Remedello_BA.
You do realize then that Levant_Chl and Iran_Chl also have around 40% Anatolian farmer? The name of the thread is total European and I agree with that non-European should defined as post-BA admixture from outside of Europe. But it wasn't movements of people like the Levant_Chl or Iran_Chl samples that contributed to modern Europeans but that of BA Anatolians. As my run shows there's far higher amount of post-BA West Asian admixture in most of southern Europe than what your runs show.

Aren
04-07-2019, 11:08 PM
This is what I've gotten. I don't know all the samples that Ibericus used.

"fit": 4.096,
"Yamnaya_Kalmykia": 52.5,
"Remedello_BA": 38.33,
"SHG": 5,
"Loschbour": 4.17,
"Baltic_HG": 0,
"EHG": 0,
"Iberomaurusian": 0,
"Levant_ChL": 0,

This is using Aren's model.

"fit": 3.5531,
"Yamnaya_Kalmykia": 52.5,
"Globular_Amphora_Poland": 47.5,
"Anatolia_EBA_Isparta": 0,
"Remedello_BA": 0,

I think from all the models I've seen that Irish are right up there as far as Yamnaya component.

That second model is what makes most sense if you ask me. It shows you as a mixture of what the Bell Beakers were pretty much - ie Steppe people who mixed with Central European farmers when they headed West during the Early Bronze Age. There's no Roman or any other Southern shifted admixture in you either from what I can tell. There's even probably only minimal amount of British farmer as most of your ancestry probably comes from EBA North-Central Europe like most NW Europeans.