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Heres with me and my Father (presenlanySVK). the 3D one looks a little strange, czechs and slovaks look closer to Irish and Dutch than to poles or ukrainians on the 3D one, and the plot is difficult to manipulate.
https://i.ibb.co/tpqmGXH/Lemgrant-EU-PCA.jpg
Slovak with a mother named boguslawa? [emoji848] And based on your other results u should be Balkan shifted. [emoji23]Quote:
Originally Posted by Omanvassal
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Here's mine:
https://imgur.com/UjUi9X6
https://imgur.com/UjUi9X6
I double checked it now and there is no error in 3D version. It is indeed like that when scaling is disabled. I performed pca with prcomp function in R (prcomp(data01[,1:13],scale. = FALSE, center = TRUE)). But when scaling is enabled, it looks closer to 2D version of PCA. Also with Firefox browser it is easier to manipulate the 3D plot.Quote:
Originally Posted by Karol Klačansky
Mother:Quote:
Originally Posted by Lemgrant
1 WEST_MED 31.08
2 ATLANTIC 19.63
3 EAST_MED 16.21
4 NORTH-CENTRAL_EURO 15.79
5 SOUTH_BALTIC 8.19
6 EAST_EURO 5.1
7 WEST_ASIAN 2.22
8 MIDDLE_EASTERN 1.02
9 EAST_ASIAN 0.42
10 WEST_AFRICAN 0.35
Me:
1 WEST_MED 24.82
2 NORTH-CENTRAL_EURO 22.98
3 ATLANTIC 21.41
4 EAST_MED 10.97
5 SOUTH_BALTIC 8.2
6 EAST_EURO 5.18
7 WEST_ASIAN 4.23
8 MIDDLE_EASTERN 1.86
9 WEST_AFRICAN 0.32
10 EAST_ASIAN 0.04
You talking about this one, last name is WisniewskiQuote:
Originally Posted by Karol Klačansky
Attachment 92854
Yea thats it!Quote:
Originally Posted by Omanvassal
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Four Bulgarian samples
BGKit-1
SOUTH_BALTIC 16.58 Pct
EAST_EURO 9.88 Pct
NORTH-CENTRAL_EURO 11.50 Pct
ATLANTIC 12.78 Pct
WEST_MED 9.31 Pct
EAST_MED 23.84 Pct
WEST_ASIAN 12.36 Pct
MIDDLE_EASTERN 3.73 Pct
SOUTH_ASIAN -
EAST_AFRICAN -
EAST_ASIAN -
SIBERIAN -
WEST_AFRICAN -
BGKit-2
SOUTH_BALTIC 16.16 Pct
EAST_EURO 8.20 Pct
NORTH-CENTRAL_EURO 14.81 Pct
ATLANTIC 9.41 Pct
WEST_MED 11.37 Pct
EAST_MED 25.32 Pct
WEST_ASIAN 12.02 Pct
MIDDLE_EASTERN 2.71 Pct
SOUTH_ASIAN -
EAST_AFRICAN -
EAST_ASIAN -
SIBERIAN -
WEST_AFRICAN -
BGKit-3
SOUTH_BALTIC 15.97 Pct
EAST_EURO 5.82 Pct
NORTH-CENTRAL_EURO 12.28 Pct
ATLANTIC 13.94 Pct
WEST_MED 10.03 Pct
EAST_MED 25.58 Pct
WEST_ASIAN 12.80 Pct
MIDDLE_EASTERN 3.16 Pct
SOUTH_ASIAN -
EAST_AFRICAN -
EAST_ASIAN -
SIBERIAN 0.40 Pct
WEST_AFRICAN -
BGKit-4
SOUTH_BALTIC 18.87 Pct
EAST_EURO 10.20 Pct
NORTH-CENTRAL_EURO 10.05 Pct
ATLANTIC 12,68 Pct
WEST_MED 17.25 Pct
EAST_MED 19.41 Pct
WEST_ASIAN 8,35 Pct
СРЕДНОИЗТОЧЕН 2,37 Pct
SOUTH_ASIAN -
EAST_AFRICAN 0.71 Pct
EAST_ASIAN 0,10 Pct
SIBERIAN -
WEST_AFRICAN -
why sorted values? unsorted are on the first page when you run the calculator on gedmatch. You need the unsorted values for pca.Quote:
Originally Posted by dududud
He should do it himself, he doesn't get a pass just cuz he's donated some precious Bulgarian samples.Quote:
Originally Posted by Lemgrant
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