Eurogenes EUtest 3D & 2D PCA

[Karol Klačansky]

Heres with me and my Father (presenlanySVK). the 3D one looks a little strange, czechs and slovaks look closer to Irish and Dutch than to poles or ukrainians on the 3D one, and the plot is difficult to manipulate.

[Karol Klačansky]

Thanks

Father: Attachment 92851
Mother: Attachment 92852

Slovak with a mother named boguslawa? [emoji848] And based on your other results u should be Balkan shifted. [emoji23]

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[SUPREEEEEME]

Here's mine:



https://imgur.com/UjUi9X6

[Lemgrant]

Heres with me and my Father (presenlanySVK). the 3D one looks a little strange, czechs and slovaks look closer to Irish and Dutch than to poles or ukrainians on the 3D one, and the plot is difficult to manipulate.

I double checked it now and there is no error in 3D version. It is indeed like that when scaling is disabled. I performed pca with prcomp function in R (prcomp(data01[,1:13],scale. = FALSE, center = TRUE)). But when scaling is enabled, it looks closer to 2D version of PCA. Also with Firefox browser it is easier to manipulate the 3D plot.

[dududud]

yes, I was inspired by you. But that is not your sample. Post yours

Mother:
1 WEST_MED 31.08
2 ATLANTIC 19.63
3 EAST_MED 16.21
4 NORTH-CENTRAL_EURO 15.79
5 SOUTH_BALTIC 8.19
6 EAST_EURO 5.1
7 WEST_ASIAN 2.22
8 MIDDLE_EASTERN 1.02
9 EAST_ASIAN 0.42
10 WEST_AFRICAN 0.35


Me:
1 WEST_MED 24.82
2 NORTH-CENTRAL_EURO 22.98
3 ATLANTIC 21.41
4 EAST_MED 10.97
5 SOUTH_BALTIC 8.2
6 EAST_EURO 5.18
7 WEST_ASIAN 4.23
8 MIDDLE_EASTERN 1.86
9 WEST_AFRICAN 0.32
10 EAST_ASIAN 0.04

[Omanvassal]

Slovak with a mother named boguslawa? [emoji848] And based on your other results u should be Balkan shifted. [emoji23]

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You talking about this one, last name is Wisniewski

20191119_103419.jpg

[Karol Klačansky]

You talking about this one, last name is Wisniewski

20191119_103419.jpg

Yea thats it!

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[PAGANE]

Four Bulgarian samples
BGKit-1


SOUTH_BALTIC 16.58 Pct
EAST_EURO 9.88 Pct
NORTH-CENTRAL_EURO 11.50 Pct
ATLANTIC 12.78 Pct
WEST_MED 9.31 Pct
EAST_MED 23.84 Pct
WEST_ASIAN 12.36 Pct
MIDDLE_EASTERN 3.73 Pct
SOUTH_ASIAN -
EAST_AFRICAN -
EAST_ASIAN -
SIBERIAN -
WEST_AFRICAN -


BGKit-2


SOUTH_BALTIC 16.16 Pct
EAST_EURO 8.20 Pct
NORTH-CENTRAL_EURO 14.81 Pct
ATLANTIC 9.41 Pct
WEST_MED 11.37 Pct
EAST_MED 25.32 Pct
WEST_ASIAN 12.02 Pct
MIDDLE_EASTERN 2.71 Pct
SOUTH_ASIAN -
EAST_AFRICAN -
EAST_ASIAN -
SIBERIAN -
WEST_AFRICAN -


BGKit-3


SOUTH_BALTIC 15.97 Pct
EAST_EURO 5.82 Pct
NORTH-CENTRAL_EURO 12.28 Pct
ATLANTIC 13.94 Pct
WEST_MED 10.03 Pct
EAST_MED 25.58 Pct
WEST_ASIAN 12.80 Pct
MIDDLE_EASTERN 3.16 Pct
SOUTH_ASIAN -
EAST_AFRICAN -
EAST_ASIAN -
SIBERIAN 0.40 Pct
WEST_AFRICAN -


BGKit-4


SOUTH_BALTIC 18.87 Pct
EAST_EURO 10.20 Pct
NORTH-CENTRAL_EURO 10.05 Pct
ATLANTIC 12,68 Pct
WEST_MED 17.25 Pct
EAST_MED 19.41 Pct
WEST_ASIAN 8,35 Pct
СРЕДНОИЗТОЧЕН 2,37 Pct
SOUTH_ASIAN -
EAST_AFRICAN 0.71 Pct
EAST_ASIAN 0,10 Pct
SIBERIAN -
WEST_AFRICAN -

[Lemgrant]

Mother:
1 WEST_MED 31.08
2 ATLANTIC 19.63
3 EAST_MED 16.21
4 NORTH-CENTRAL_EURO 15.79
5 SOUTH_BALTIC 8.19
6 EAST_EURO 5.1
7 WEST_ASIAN 2.22
8 MIDDLE_EASTERN 1.02
9 EAST_ASIAN 0.42
10 WEST_AFRICAN 0.35


Me:
1 WEST_MED 24.82
2 NORTH-CENTRAL_EURO 22.98
3 ATLANTIC 21.41
4 EAST_MED 10.97
5 SOUTH_BALTIC 8.2
6 EAST_EURO 5.18
7 WEST_ASIAN 4.23
8 MIDDLE_EASTERN 1.86
9 WEST_AFRICAN 0.32
10 EAST_ASIAN 0.04

why sorted values? unsorted are on the first page when you run the calculator on gedmatch. You need the unsorted values for pca.

[Karol Klačansky]

why sorted values? unsorted are on the first page when you run the calculator on gedmatch. You need the unsorted values for pca.

He should do it himself, he doesn't get a pass just cuz he's donated some precious Bulgarian samples.

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