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Yes, I think that there are a major difference.
Finns are known to be asocial or even unfriendly (not all of them, but many). Estonians were quite different. Genetically there is no big difference.
There is also major difference in societies: Finland is based on social democracy and is quite leftist, while Estonia is very right-wing/antisocialist (most of them don´t want any socialism after Soviet era).
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