New MDLP Calculator

[safinator]

is it on Gedmatch yet?

Nope and i wonder why, months have passed as of now.

[MfA_]

Nope and i wonder why, months have passed as of now.

Because it's meant for commercial use and this beta version was released for testing..

[Myth]

I'm not sure if I did it right, but I downloaded the DIY program and the MDLP files, basically ran the test.par file and added the population set to test.txt, from there it says that this is Dodecad, I don't know if that's correct or not? Anyways, the results are below. Once that was finished, I ran MOracle2(c(0, 0.01, 24.56, 0.90, 0, 1.35, 0, 20.92, 0.01, 0.39, 0, 0.67, 0, 1.88, 10.76, 1.06, 0, 0, 0, 26.06, 0.30, 5.24, 0.75, 0.89, 0.32, 3.91, 0) as well as the mixed mode with my percentages and these are my results.

-- DIY Dodecad v 2.1 --------------------------------------
------------------------------------------------@@@@@@@----
-- Copyright (c) 2011 Dienekes Pontikos -------@@-----@@---
------------------------------------------------------@@---
-- More information: ---------------------------@@@@@@@----
----- Dienekes' Anthropology Blog -------------@@----------
-------- http://dienekes.blogspot.com ---------@@----------
----- The Dodecad Ancestry Project ------------@@@@@@@@@---
-------- http://dodecad.blogspot.com ----------------------
-----------------------------------------------------------

27 ancestral populations
118536 total SNPs
7749 flipped SNPs
38340 heterozygous SNPs
106 no-calls
3780 absent SNPs
0.967217 genotype rate
mode genomewide

3886 SNPs missing (no-call or absent)


24649 total iterations
9.995E-09 final dQ

----------------------------
FINAL ADMIXTURE PROPORTIONS:
----------------------------

0.00% Nilotic-Omotic
0.01% Ancestral-South-Indi
24.56% North-European-Balti
0.90% Uralic
0.00% Australo-Melanesian
1.35% East-Siberean
0.00% Ancestral-Yayoi
20.92% Caucasian-Near-Easte
0.01% Tibeto-Burman
0.39% Austronesian
0.00% Central-African-Pygm
0.67% Central-African-Hunt
0.00% Nilo-Saharian
1.88% North-African
10.76% Gedrosia-Caucasian
1.06% Cushitic
0.00% Congo-Pygmean
0.00% Bushmen
0.00% South-Meso-Amerindia
26.06% South-West-European
0.30% North-Amerindian
5.24% Arabic
0.75% North-Circumpolar
0.89% Kalash
0.32% Papuan-Australian
3.91% Baltic-Finnic
0.00% Bantu

CPU time = 1368.30 sec
>


MOracle2(c(0, 0.01, 24.56, 0.90, 0, 1.35, 0, 20.92, 0.01, 0.39, 0, 0.67, 0, 1.88, 10.76, 1.06, 0, 0, 0, 26.06, 0.30, 5.24, 0.75, 0.89, 0.32, 3.91, 0))
[,1] [,2]
[1,] "Swiss" "10.3208"
[2,] "North-Italian" "13.0258"
[3,] "Kosovar" "13.8971"
[4,] "Provancal" "13.9721"
[5,] "North_Italian" "14.878"
[6,] "Toscani" "14.9062"
[7,] "Macedonian" "14.9694"
[8,] "Bulgarian" "15.0488"
[9,] "Tuscan" "15.2126"
[10,] "North-Greek" "15.3281"
> MOracle2(c(0, 0.01, 24.56, 0.90, 0, 1.35, 0, 20.92, 0.01, 0.39, 0, 0.67, 0, 1.88, 10.76, 1.06, 0, 0, 0, 26.06, 0.30, 5.24, 0.75, 0.89, 0.32, 3.91, 0), mixedmode=T)
[,1] [,2]
[1,] "41.2% Orcadian + 58.8% Romanian_Jew" "2.1441"
[2,] "44.5% North-West-European + 55.5% Romanian_Jew" "2.1522"
[3,] "54.1% Romanian_Jew + 45.9% Welsh" "2.2334"
[4,] "42.6% British + 57.4% Romanian_Jew" "2.2687"
[5,] "41.1% Sephardic_Bulgaria + 58.9% South_German" "2.3478"
[6,] "44.2% North_German + 55.8% West-Sicilian" "2.3648"
[7,] "46% Cretan + 54% N._European" "2.4905"
[8,] "53.2% South_German + 46.8% West-Sicilian" "2.5567"
[9,] "44.9% N._European + 55.1% Romanian_Jew" "2.5971"
[10,] "49.9% Ashkenazi + 50.1% N._European" "2.6067"
>