Mixed mode oracle algorithm from Gedmatch applied to G25 Datasheet

[happycow]

You're from the West Bank if I'm not mistaken? Toppo900 and I are from the Galilee. It's a shame that there aren't any other Palestinian G25 coordinates floating around. Have you tried modeling yourself after modern populations? I'm still working on mine.

Yeah I am from the west bank. I think Toppo made a thread for me a while back using modern populations? I can't remember.

[whoibe]

Yeah I am from the west bank. I think Toppo made a thread for me a while back using modern populations? I can't remember.

Would you mind giving me your coordinates? The ones I found here are only 24 total. Toppo must've copy pasted them wrong.

[Lemgrant]

Would you mind giving me your coordinates? The ones I found here are only 24 total. Toppo must've copy pasted them wrong.

There are 25 total. They are correct. You probably didn't noticed the zero after -0.0012

[Lemgrant]

Ayetooey's result (He is almost half British and half Serbian/Bosnian, but also 1/16 French. His results from myheritage -> https://i.imgur.com/1GaKR3C.jpg)
https://www.theapricity.com/forum/sh...=1#post5705595
He is not Austrian, it's just the midpoint of his mix.

G25n(c(0.0117,0.013,0.0123,0.0107,0.0121,0.0061,-0.002,0.0031,0.0022,-0.002,-0.0029,4e-04,2e-04,-0.0033,-4e-04,0.0108,0.0136,0.0054,0.0036,0.0023,-0.0032,-0.0014,0.0056,0.01,-2e-04),k=60)
      [,1]                                  [,2]    
 [1,] "Hungary_Medieval_Szolad:SZ5"         "0.0155"
 [2,] "Austrian:Austria7"                   "0.0156"
 [3,] "Austrian:Austria16"                  "0.0163"
 [4,] "Beaker_Czech:I4945"                  "0.0164"
 [5,] "German:German40"                     "0.0172"
 [6,] "German:German51"                     "0.0176"
 [7,] "German:German9"                      "0.0186"
 [8,] "German:German4"                      "0.0187"
 [9,] "Iberia_Northeast_c.6CE_PL:I12163"    "0.0192"
[10,] "Croatian:Croatia_Cro26"              "0.0193"
[11,] "Austrian:Austria13"                  "0.0193"
[12,] "German:German62"                     "0.0197"
[13,] "French:French10"                     "0.0198"
[14,] "Hungarian:NA15207"                   "0.02"  
[15,] "Croatian:Croatia_Cro198"             "0.0201"
[16,] "Slovakian:Slovakia96"                "0.0207"
[17,] "Swedish:Sweden11"                    "0.0208"
[18,] "Swedish:Sweden12"                    "0.0213"
[19,] "German:German10"                     "0.0213"
[20,] "Slovakia_Poprad_Med:DA119"           "0.0215"
[21,] "Montenegrin:Montenegro7"             "0.0218"
[22,] "Sweden_Viking_Age_Sigtuna:vik_84001" "0.022" 
[23,] "Polish:Polish28"                     "0.0222"
[24,] "Austrian:Austria17"                  "0.0222"
[25,] "French_East:French24075"             "0.0223"
[26,] "Hungary_Medieval_Szolad:SZ3"         "0.0224"
[27,] "Hungarian:NA15200"                   "0.0225"
[28,] "German:German16"                     "0.0225"
[29,] "Slovakian:Slovakia85"                "0.0226"
[30,] "French_East:French24178"             "0.0226"
[31,] "Hungary_Medieval_Szolad:SZ27"        "0.0227"
[32,] "German:German73"                     "0.0227"
[33,] "Serbian:Serbian_Serbia5"             "0.0229"
[34,] "Montenegrin:Montenegro1"             "0.0229"
[35,] "Bosnian:Bosnian_14"                  "0.0229"
[36,] "Hungary_Medieval_Szolad:SZ11"        "0.023" 
[37,] "England_IA:L-I0789"                  "0.0231"
[38,] "Hungary_Medieval_Szolad:SZ23"        "0.0231"
[39,] "Romanian:A306"                       "0.0232"
[40,] "German:German76"                     "0.0232"
[41,] "Alberstedt_LN:I0118"                 "0.0234"
[42,] "French:French47"                     "0.0234"
[43,] "Slovakian:Slovakia118"               "0.0235"
[44,] "Orcadian:HGDP00802"                  "0.0236"
[45,] "Italy_Medieval_Collegno:CL53"        "0.0236"
[46,] "German:German19"                     "0.0237"
[47,] "German:German77"                     "0.0238"
[48,] "German:German21"                     "0.0238"
[49,] "Czech:NA15726"                       "0.0238"
[50,] "Austrian:Austria15"                  "0.0239"
[51,] "Beaker_Bavaria:I3600"                "0.024" 
[52,] "German:German26"                     "0.024" 
[53,] "Sweden_Viking_Age_Sigtuna:vik_97002" "0.024" 
[54,] "German:German28"                     "0.0241"
[55,] "Belgian:Belgium26"                   "0.0242"
[56,] "Dutch:Netherlands30"                 "0.0244"
[57,] "German:German71"                     "0.0244"
[58,] "Croatian:Croatia_Cro133"             "0.0245"
[59,] "German:German12"                     "0.0245"
[60,] "Croatian:Croatia_Cro305"             "0.0245"
>

G25n(c(0.0117,0.013,0.0123,0.0107,0.0121,0.0061,-0.002,0.0031,0.0022,-0.002,-0.0029,4e-04,2e-04,-0.0033,-4e-04,0.0108,0.0136,0.0054,0.0036,0.0023,-0.0032,-0.0014,0.0056,0.01,-2e-04),k=60,mixedmode=T)
      [,1]                                                                       
 [1,] "42.8% Macedonian:Macedonian2 + 57.2% Swedish:Sweden11"                    
 [2,] "53.9% German:German16 + 46.1% Scythian_Hungary:DA195"                     
 [3,] "44.3% Macedonian:Macedonian2 + 55.7% Sweden_Viking_Age_Sigtuna:vik_84001" 
 [4,] "50.8% Bosnian:Bosnian_14 + 49.2% Orcadian:HGDP00802"                      
 [5,] "56.9% Croatian:Croatia_Cro26 + 43.1% German:German26"                     
 [6,] "45.4% German:German26 + 54.6% Slovakian:Slovakia96"                       
 [7,] "48.7% Montenegrin:Montenegro1 + 51.3% Sweden_Viking_Age_Sigtuna:vik_84001"
 [8,] "55% Bosnian:Bosnian_14 + 45% Norwegian:NOR106"                            
 [9,] "40.5% Belgian:Belgium24 + 59.5% Croatian:Croatia_Cro26"                   
[10,] "65.5% Beaker_Czech:I4945 + 34.5% Czech:Czech_Republic2"                   
[11,] "47.6% Macedonian:Macedonian2 + 52.4% Norwegian:NOR109"                    
[12,] "41.6% Norwegian:NOR106 + 58.4% Slovakian:Slovakia96"                      
[13,] "45.4% Moldovan:747_R02C02 + 54.6% Orcadian:HGDP00802"                     
[14,] "43.3% Scythian_Hungary:DA195 + 56.7% Swedish:Sweden11"                    
[15,] "46.9% Montenegrin:Montenegro1 + 53.1% Swedish:Sweden11"                   
[16,] "45.7% Orcadian:HGDP00802 + 54.3% Slovakian:Slovakia96"                    
[17,] "51% French:French30 + 49% Polish:Polish39"                                
[18,] "60.2% German:German26 + 39.8% Ukrainian:Ukrainian12"                      
[19,] "45% Scythian_Hungary:DA195 + 55% Sweden_Viking_Age_Sigtuna:vik_84001"     
[20,] "47.4% German:German26 + 52.6% Polish:Polish28"                            
[21,] "50.9% Montenegrin:Montenegro1 + 49.1% Orcadian:HGDP00802"                 
[22,] "37% England_MBA:I7640 + 63% Montenegrin:Montenegro1"                      
[23,] "61.5% Croatian:Croatia_Cro26 + 38.5% Hungary_Medieval_Szolad:SZ15"        
[24,] "57.2% Beaker_Czech:I4945 + 42.8% German:German62"                         
[25,] "50.9% German:German26 + 49.1% Moldovan:747_R01C02"                        
[26,] "65.9% Austrian:Austria7 + 34.1% German:German26"                          
[27,] "56.6% Beaker_Czech:I4945 + 43.4% Croatian:Croatia_Cro26"                  
[28,] "42.5% Belgian:Belgium24 + 57.5% Slovakian:Slovakia96"                     
[29,] "56% Croatian:Croatia_Cro198 + 44% German:German26"                        
[30,] "40.9% Beaker_Britain:I5513 + 59.1% Macedonian:Macedonian2"                
[31,] "50.5% German:German16 + 49.5% Montenegrin:Montenegro1"                    
[32,] "48% German:German26 + 52% Slovakian:Slovakia85"                           
[33,] "69.5% Beaker_Czech:I4945 + 30.5% Sweden_Viking_Age_Sigtuna:vik_urm035"    
[34,] "48.7% French:French30 + 51.3% Slovakian:Slovakia77"                       
[35,] "76.4% Beaker_Czech:I4945 + 23.6% Russian_Tver:Russia_Tver418"             
[36,] "41.1% Macedonian:Macedonian7 + 58.9% Swedish:Sweden11"                    
[37,] "52.6% Bulgarian:BulgarianE2 + 47.4% Hungary_Medieval_Szolad:SZ15"         
[38,] "61.3% German:German26 + 38.7% Russian_Orel:russianOrjol78"                
[39,] "40.8% Irish:Irish38 + 59.2% Slovakian:Slovakia96"                         
[40,] "68.7% Beaker_Czech:I4945 + 31.3% Polish:Polish15"                         
[41,] "47.8% German:German12 + 52.2% Montenegrin:Montenegro1"                    
[42,] "52.3% Bosnian:Bosnian_14 + 47.7% Norwegian:NOR109"                        
[43,] "36.3% Beaker_Britain:I5513 + 63.7% Montenegrin:Montenegro1"               
[44,] "43.2% Bulgarian:Bulgaria1 + 56.8% Sweden_Viking_Age_Sigtuna:vik_84001"    
[45,] "57% Croatian:Croatia_Cro26 + 43% Orcadian:HGDP00802"                      
[46,] "46.8% Serbian:Serbian_Serbia5 + 53.2% Swedish:Sweden11"                   
[47,] "33.3% Greek:GREEKGRALPOP4 + 66.7% Swedish:Sweden11"                       
[48,] "41.4% Bulgarian:Bulgaria1 + 58.6% Swedish:Sweden11"                       
[49,] "40.7% Hungary_Medieval_Szolad:SZ15 + 59.3% Slovakian:Slovakia96"          
[50,] "44% England_Anglo-Saxon:O1-I0769 + 56% Macedonian:Macedonian2"            
[51,] "40.9% Beaker_Britain:I6775 + 59.1% Bosnian:Bosnian_14"                    
[52,] "77.9% Beaker_Czech:I4945 + 22.1% Sweden_Viking_Age_Sigtuna:vik_KAL006"    
[53,] "55.3% Croatian:Croatia_Cro26 + 44.7% Hungary_Medieval_Szolad:SZ3"         
[54,] "55.4% German:German16 + 44.6% Serbian:Serbian_Serbia4"                    
[55,] "59.5% Beaker_Czech:I4945 + 40.5% Slovakian:Slovakia96"                    
[56,] "56% German:German9 + 44% Montenegrin:Montenegro7"                         
[57,] "55.8% Hungarian:NA15207 + 44.2% Orcadian:HGDP00802"                       
[58,] "55.4% German:German16 + 44.6% Macedonian:Macedonian2"                     
[59,] "58.2% Beaker_Czech:I4945 + 41.8% Hungarian:NA15207"                       
[60,] "49.4% Croatian:Croatia_Cro133 + 50.6% German:German26"                    
      [,2]    
 [1,] "0.0092"
 [2,] "0.0095"
 [3,] "0.0096"
 [4,] "0.0097"
 [5,] "0.0098"
 [6,] "0.01"  
 [7,] "0.0102"
 [8,] "0.0103"
 [9,] "0.0103"
[10,] "0.0104"
[11,] "0.0105"
[12,] "0.0106"
[13,] "0.0106"
[14,] "0.0107"
[15,] "0.0107"
[16,] "0.0108"
[17,] "0.0108"
[18,] "0.0108"
[19,] "0.0109"
[20,] "0.0109"
[21,] "0.0109"
[22,] "0.011" 
[23,] "0.011" 
[24,] "0.011" 
[25,] "0.011" 
[26,] "0.0111"
[27,] "0.0112"
[28,] "0.0112"
[29,] "0.0112"
[30,] "0.0112"
[31,] "0.0112"
[32,] "0.0112"
[33,] "0.0112"
[34,] "0.0112"
[35,] "0.0112"
[36,] "0.0113"
[37,] "0.0113"
[38,] "0.0114"
[39,] "0.0114"
[40,] "0.0114"
[41,] "0.0114"
[42,] "0.0114"
[43,] "0.0114"
[44,] "0.0114"
[45,] "0.0114"
[46,] "0.0115"
[47,] "0.0115"
[48,] "0.0115"
[49,] "0.0115"
[50,] "0.0115"
[51,] "0.0115"
[52,] "0.0115"
[53,] "0.0115"
[54,] "0.0115"
[55,] "0.0115"
[56,] "0.0115"
[57,] "0.0116"
[58,] "0.0116"
[59,] "0.0116"
[60,] "0.0116"

[whoibe]

There are 25 total. They are correct. You probably didn't noticed the zero after -0.0012

Turned out PC12 and PC22 were PC1 2 and PC2 2 when he pasted them for some reason. But why am I not getting the same fit when I run Nmonte3?

"distance%=1.5594"

	 TimA_scaled

Levant_BA_North,42.6
Egyptian,32.8
Iranian_Fars,13.8
Greek,10.8

[Vasconcelos]

nMonte doesn't always return the same result when using the penalty. Besides the webrunner uses less cycles and batches in its calculation, so there will always be differences. No point in using the webrunner if you're familiar with R, unless you just need a quick check and can't be bothered to make the dataset in a .txt

With that said, those results are virtually the same

[Lemgrant]

Turned out PC12 and PC22 were PC1 2 and PC2 2 when he pasted them for some reason. But why am I not getting the same fit when I run Nmonte3?

"distance%=1.5594"

	 TimA_scaled

Levant_BA_North,42.6
Egyptian,32.8
Iranian_Fars,13.8
Greek,10.8

It's the same for everyone. For some reason fit is much lower on that website in comparison with R. I don't know why.

[whoibe]

Is there a spreadsheet somewhere with just moderns in it?

[Lemgrant]

Is there a spreadsheet somewhere with just moderns in it?

yes, look in the quote https://www.theapricity.com/forum/sh...=1#post5955640

[whoibe]

yes, look in the quote https://www.theapricity.com/forum/sh...=1#post5955640

Nice! This is what happycow gets (top 10):

"distance%=1.1229"
TimA_scaled
Palestinian,30.2
Lebanese_Muslim,15
BedouinA,9.8
Syrian,4.8
Druze,3
Egyptian,2.8
Greek_Trabzon,2.8
Yemenite_Dhamar,2.2
Lebanese_Christian,2
BedouinB,1.8