Mega QAPDM Models thread

[Gannicus]

I haven't had much luck with medieval samples yet.

This is another good model:

Ireland EBA Rathlin2 + Minoan



pat wt dof chisq p f4rank Ireland_EBA.SG_rath2.SG Greece_Crete_HgCharalambos_EMBA.AG feasible best dofdiff chisqdiff p_nested
00 0 12 12.973786183094607 0.37094889791715024 1 0.7998928166849076 0.20010718331509242 TRUE NA NA NA NA
01 1 13 28.921362767488024 0.006716122080505627 0 1 NA TRUE TRUE 0 -398.4088686573338 1
10 1 13 427.3302314248218 3.732551633024282e-83 0 NA 1 TRUE TRUE NA NA NA

Same rights as previous post

[Gannicus]

This run has a really good p-value:







Chi-squared = 4.87

pat wt dof chisq p f4rank Russia_Samara_EBA_Yamnaya.AG Turkey_Central_Catalhoyuk_N.SG Luxembourg_Mesolithic.DG_Loschbour.DG feasible best dofdiff chisqdiff p_nested
000 0 11 4.866129917986197 0.9374759112717503 2 0.44427443972017017 0.4109106704024678 0.14481488987736207 TRUE NA NA NA NA
001 1 12 22.56617198543811 0.03164309064139399 1 0.4636335952541724 0.5363664047458276 NA TRUE TRUE 0 -128.67045269679804 1
010 1 12 151.23662468223614 3.181448605685366e-26 1 0.8518076009691895 NA 0.14819239903081052 TRUE TRUE 0 128.04024231211946 0
100 1 12 23.196382370116694 0.026104235871953096 1 NA 0.7937460664741767 0.20625393352582339 TRUE TRUE NA NA NA
011 2 13 258.8652171497984 9.201495381431885e-48 0 1 NA NA TRUE NA NA NA NA
101 2 13 35.00377467190446 8.455469917767836e-4 0 NA 1 NA TRUE NA NA NA NA
110 2 13 1062.7549585939366 5.763691654010331e-219 0 NA NA 1 TRUE NA NA NA NA

[Gannicus]

To quote DJ Khaled, another one

[majevica]

Karelia also has CHG admix. They even have 4 people with J1 from mesolithic karelia.
Attachment 141747

I see, now my low AG3 in this model makes sense

[AndreiDNA]

Just gonna drop this here

[Gannicus]

Just gonna drop this here

Would that 10% Gorilla be a proxy for the unknown archaic lineage that is found in SSA populations?

[Gannicus]

Modeled myself with Morocco_MN skh001 which is the sample used to model NUE001 from the Nature article. He was ~80% skh001 and ~20% Mesopotamia_N


Rights:

[AndreiDNA]

i found something out about illustrative's qpadm.
kind of embarassing for the illustrative crew.

they have unique datasets for each sample uploaded
not for each user
meaning if you upload a second file, you're creating a second distinct dataset
not just merging your second file with the dataset that contains your first, which is how I would engineer this system if i was in charge
this seems very stupid to me
first of all, this will cost them
because each new upload is another 3Gb of space that they have to pay for
second, people won't be able to model themselves with samples that aren't already on the dataset
and lastly, nothing stops people from uploading more and more and more shit there, continuously eating up the available space on their servers, 3GB by 3GB by 3GB

with my services you can merge as many samples with the dataset as you want (within reason, don't give me too much work like merging 5 samples with the dataset)
so if you want me to model you as your mom + kura araxes, I can

[Gannicus]

Did some FST runs:






Distances in order from closest to furthest:

Population		FST		Std. Error
----------------------------------------
Norwegian.DG         -0.0049	   0.00507
Czech.DG             -0.0009	   0.00513
English.DG            0.0008	   0.00401
French.DG             0.0022	   0.00308
Spanish.HO            0.0038	   0.00302
Italian_Central.HO    0.0053	   0.00311
Scottish.HO           0.0069	   0.00339
Italian_South.HO      0.0079	   0.00308
Greek_WGA.HO          0.0081	   0.00311
Russian.DG            0.0094	   0.00306
Basque.DG             0.0110	   0.00315
Turkish.DG            0.0125	   0.00386
Lebanese_Christian.HO  0.0141	   0.00313
Iranian.HO            0.0143	   0.00304
Tajik.HO              0.0143	   0.00303
Syrian.HO             0.0155	   0.00309
Assyrian.HO           0.0161	   0.00315
Egyptian.HO           0.0209	   0.00303
Saudi.HO              0.0245	   0.00330
Balochi.HO            0.0254	   0.00310
Moroccan.HO           0.0289	   0.00313
GujaratiA.HO          0.0266	   0.00337
Turkmen.HO            0.0237	   0.00322
Uzbek.HO              0.0243	   0.00308
Punjabi.HO            0.0388	   0.00328
Uyghur.HO             0.0375	   0.00325
Hazara.HO             0.0409	   0.00318
Kalash.HO             0.0456	   0.00327
Kazakh.HO             0.0488	   0.00319
Kyrgyz_Kyrgyzstan.HO  0.0531	   0.00337
Eritrea.HO            0.0518	   0.00342
Afar_WGA.HO           0.0571	   0.00330
Somali.HO             0.0755	   0.00316
Mongol.HO             0.0816	   0.00331
Thai.HO               0.0943	   0.00333
Visayan.HO            0.1091	   0.00363
Han.HO                0.1093	   0.00336
Korean.HO             0.1096	   0.00358
Japanese.HO           0.1104	   0.00342
Vietnamese.HO         0.1108	   0.00348
Quechua.HO            0.1217	   0.00398
Zapotec.HO            0.1365	   0.00365
Mixe.HO               0.1630	   0.00376
Piapoco.HO            0.1659	   0.00401
Pima.HO               0.1677	   0.00385
Karitiana.HO          0.2066	   0.00398
Surui.HO              0.2273	   0.00426
Australian.HO         0.1816	   0.00404
Papuan.HO             0.1902	   0.00372
BantuKenya.HO         0.1461	   0.00337
Yoruba.HO             0.1517	   0.00332
Khomani.HO            0.1723	   0.00346
Hadza1.HO             0.1890	   0.00386
Mbuti.HO              0.2058	   0.00353

[Gannicus]

And finally, I've got a combination that assigns Natufian admix by itself:






References:




Edit: Andrei these are mostly your rights from a few models you made for me. I just added a couple samples and swapped out Pinarbasi for Boncuklu N.